Hi
For some reason Expression(...)
encounters an error.
Ran a simple ipython session:
---------------------------------------------------------------
In [1]: from dolfin import *
In [2]: mesh = UnitSquareMesh(3,3)
In [3]: V = FunctionSpace(mesh, 'CG', 1)
In [4]: e = Expression("x[0]")
Calling DOLFIN just-in-time (JIT) compiler, this may take some time.
In instant.recompile: The module did not compile with command 'make VERBOSE=1',
see 'DIRECTORY/compile.log'
---------------------------------------------------------------
Doesn't seem to work. I have installed FEniCS from source.
Attached error log file.
-Shafa
-- The C compiler identification is GNU 4.9.2
-- The CXX compiler identification is GNU 4.9.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found SWIG: /home/Ace/.hashdist/bld/swig/j4pwehycluyg/bin/swig (found version "3.0.2")
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
DEBUG
-- Build files have been written to: /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592
/home/Ace/.hashdist/bld/cmake/nanfm6dw2fzx/bin/cmake -H/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 -B/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 --check-build-system CMakeFiles/Makefile.cmake 0
/home/Ace/.hashdist/bld/cmake/nanfm6dw2fzx/bin/cmake -E cmake_progress_start /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/CMakeFiles /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592'
make -f CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/build.make CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/depend
make[2]: Entering directory '/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592'
/home/Ace/.hashdist/bld/cmake/nanfm6dw2fzx/bin/cmake -E cmake_progress_report /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/CMakeFiles 1
[ 50%] Swig source
/home/Ace/.hashdist/bld/cmake/nanfm6dw2fzx/bin/cmake -E make_directory /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592
/home/Ace/.hashdist/bld/swig/j4pwehycluyg/bin/swig -python -module dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 -shadow -modern -modernargs -fastdispatch -fvirtual -nosafecstrings -noproxydel -fastproxy -fastinit -fastunpack -fastquery -nobuildnone -DDOLFIN_VERSION="1.5.0" -DBOOST_UBLAS_NDEBUG -DDOLFIN_SIZE_T=8 -DDOLFIN_LA_INDEX_SIZE=4 -DHAS_HDF5 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE -DHAS_SLEPC -DHAS_PETSC -DENABLE_PETSC_SNES -DENABLE_PETSC_TAO -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH -DHAS_PARMETIS -DHAS_ZLIB -DHAS_MPI -DHAS_OPENMP -DHAS_VTK -DHAS_PETSC4PY -DHAS_SLEPC4PY -DNUMPY_VERSION_MAJOR=1 -DNUMPY_VERSION_MINOR=8 -DNUMPY_VERSION_MICRO=2 -DNPY_NO_DEPRECATED_API=NPY_1_8_API_VERSION -c++ -fcompact -O -I. -small -outdir /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 -c++ -I/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include -I/home/Ace/.hashdist/bld/libxml2/mlk7x2dhjiud/include/libxml2 -I/home/Ace/.hashdist/bld/ffc/flobf246igg3/include -I/home/Ace/.hashdist/bld/slepc/47nm3blvq3iz/include -I/home/Ace/.hashdist/bld/suitesparse/wfhr2dth3mfb/include/suitesparse -I/home/Ace/.hashdist/bld/scotch/vyqtwuifsjry/include -I/home/Ace/.hashdist/bld/zlib/v6anirfvk2op/include -I/home/Ace/.hashdist/bld/mpi/hbd47qrzmwye/include -I/home/Ace/.hashdist/bld/eigen/aoytfcoxhttj/include/eigen3 -I/home/Ace/.hashdist/bld/boost/qfiyw3udonv5/include -I/home/Ace/.hashdist/bld/hdf5/lqym3um6gyxk/include -I/home/Ace/.hashdist/bld/petsc/nt5ppr4inva2/include -I/home/Ace/.hashdist/bld/superlu_dist/dkkgllj66sqt/include -I/home/Ace/.hashdist/bld/hypre/27x5zovieela/include -I/home/Ace/.hashdist/bld/parmetis/swux5owl6onc/include -I/home/Ace/.hashdist/bld/vtk/7y5tduwxoiyh/include/vtk-5.10 -I/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/. -I/home/Ace/.hashdist/bld/numpy/evzjhcqfff5k/lib/python2.7/site-packages/numpy/core/include -I/home/Ace/.hashdist/bld/python/2cti5gezei2e/include/python2.7 -I/home/Ace/.hashdist/bld/petsc4py/afcfupqwd2q3/lib/python2.7/site-packages/petsc4py/include -I/home/Ace/.hashdist/bld/slepc4py/tadvbsmpg2w3/lib/python2.7/site-packages/slepc4py/include -I/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 -o /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592PYTHON_wrap.cxx /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i
/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include/dolfin/la/LinearAlgebraObject.h:36: Warning 520: Derived class 'LinearAlgebraObject' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include/dolfin/function/Function.h:63: Warning 402: Base class 'Hierarchical< Function >' is incomplete.
/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include/dolfin/swig/function/pre.i:219: Warning 402: Only forward declaration 'Hierarchical< Function >' was found.
/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include/dolfin/function/Function.h:64: Warning 520: Derived class 'Function' of 'dolfin::GenericFunction' is not similarly marked as a smart pointer.
/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include/dolfin/function/Function.h:64: Warning 520: Derived class 'Function' of 'ufc::function' is not similarly marked as a smart pointer.
/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include/dolfin/function/Function.h:64: Warning 520: Derived class 'Function' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include/dolfin/function/FunctionSpace.h:53: Warning 402: Base class 'Hierarchical< FunctionSpace >' is incomplete.
/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include/dolfin/swig/function/pre.i:218: Warning 402: Only forward declaration 'Hierarchical< FunctionSpace >' was found.
/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include/dolfin/function/FunctionSpace.h:54: Warning 520: Derived class 'FunctionSpace' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:170: Warning 315: Nothing known about 'std::cos'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:171: Warning 315: Nothing known about 'std::sin'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:172: Warning 315: Nothing known about 'std::tan'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:173: Warning 315: Nothing known about 'std::acos'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:174: Warning 315: Nothing known about 'std::asin'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:175: Warning 315: Nothing known about 'std::atan'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:176: Warning 315: Nothing known about 'std::atan2'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:177: Warning 315: Nothing known about 'std::cosh'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:178: Warning 315: Nothing known about 'std::sinh'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:179: Warning 315: Nothing known about 'std::tanh'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:180: Warning 315: Nothing known about 'std::exp'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:181: Warning 315: Nothing known about 'std::frexp'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:182: Warning 315: Nothing known about 'std::ldexp'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:183: Warning 315: Nothing known about 'std::log'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:184: Warning 315: Nothing known about 'std::log10'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:185: Warning 315: Nothing known about 'std::modf'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:186: Warning 315: Nothing known about 'std::pow'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:187: Warning 315: Nothing known about 'std::sqrt'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:188: Warning 315: Nothing known about 'std::ceil'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:189: Warning 315: Nothing known about 'std::fabs'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:190: Warning 315: Nothing known about 'std::floor'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:191: Warning 315: Nothing known about 'std::fmod'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:192: Warning 315: Nothing known about 'std::max'.
/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.i:193: Warning 315: Nothing known about 'std::min'.
cd /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 && /home/Ace/.hashdist/bld/cmake/nanfm6dw2fzx/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/DependInfo.cmake --color=
Dependee "/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/DependInfo.cmake" is newer than depender "/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/depend.internal".
Dependee "/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/depend.internal".
Scanning dependencies of target _dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592
make[2]: Leaving directory '/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592'
make -f CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/build.make CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/build
make[2]: Entering directory '/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592'
/home/Ace/.hashdist/bld/cmake/nanfm6dw2fzx/bin/cmake -E cmake_progress_report /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/CMakeFiles 2
[100%] Building CXX object CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592PYTHON_wrap.cxx.o
/usr/bin/c++ -DBOOST_UBLAS_NDEBUG -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"1.5.0\" -DENABLE_PETSC_SNES -DENABLE_PETSC_TAO -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_OPENMP -DHAS_PARMETIS -DHAS_PETSC -DHAS_PETSC4PY -DHAS_SCOTCH -DHAS_SLEPC -DHAS_SLEPC4PY -DHAS_UMFPACK -DHAS_VTK -DHAS_ZLIB -DNPY_NO_DEPRECATED_API=NPY_1_8_API_VERSION -DNUMPY_VERSION_MAJOR=1 -DNUMPY_VERSION_MICRO=2 -DNUMPY_VERSION_MINOR=8 -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592_EXPORTS -std=c++11 -Wno-deprecated -fopenmp -O2 -fPIC -I/home/Ace/.hashdist/bld/dolfin/fb53yrhplia2/include -isystem /home/Ace/.hashdist/bld/libxml2/mlk7x2dhjiud/include/libxml2 -isystem /home/Ace/.hashdist/bld/ffc/flobf246igg3/include -isystem /home/Ace/.hashdist/bld/slepc/47nm3blvq3iz/include -isystem /home/Ace/.hashdist/bld/suitesparse/wfhr2dth3mfb/include/suitesparse -isystem /home/Ace/.hashdist/bld/scotch/vyqtwuifsjry/include -isystem /home/Ace/.hashdist/bld/zlib/v6anirfvk2op/include -isystem /home/Ace/.hashdist/bld/mpi/hbd47qrzmwye/include -isystem /home/Ace/.hashdist/bld/eigen/aoytfcoxhttj/include/eigen3 -isystem /home/Ace/.hashdist/bld/boost/qfiyw3udonv5/include -isystem /home/Ace/.hashdist/bld/hdf5/lqym3um6gyxk/include -isystem /home/Ace/.hashdist/bld/petsc/nt5ppr4inva2/include -isystem /home/Ace/.hashdist/bld/superlu_dist/dkkgllj66sqt/include -isystem /home/Ace/.hashdist/bld/hypre/27x5zovieela/include -isystem /home/Ace/.hashdist/bld/parmetis/swux5owl6onc/include -isystem /home/Ace/.hashdist/bld/vtk/7y5tduwxoiyh/include/vtk-5.10 -I/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/. -I/home/Ace/.hashdist/bld/numpy/evzjhcqfff5k/lib/python2.7/site-packages/numpy/core/include -I/home/Ace/.hashdist/bld/python/2cti5gezei2e/include/python2.7 -I/home/Ace/.hashdist/bld/petsc4py/afcfupqwd2q3/lib/python2.7/site-packages/petsc4py/include -I/home/Ace/.hashdist/bld/slepc4py/tadvbsmpg2w3/lib/python2.7/site-packages/slepc4py/include -I/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592 -o CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592PYTHON_wrap.cxx.o -c /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592PYTHON_wrap.cxx
In file included from /usr/include/limits.h:25:0,
from /usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h:168,
from /usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/syslimits.h:7,
from /usr/lib/gcc/x86_64-redhat-linux/4.9.2/include/limits.h:34,
from /home/Ace/.hashdist/bld/python/2cti5gezei2e/include/python2.7/Python.h:19,
from /tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592PYTHON_wrap.cxx:155:
/usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
# warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
^
make[2]: *** No rule to make target '/usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgfortran.so', needed by '_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.so'. Stop.
make[2]: Leaving directory '/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592'
CMakeFiles/Makefile2:60: recipe for target 'CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/all' failed
make[1]: *** [CMakeFiles/_dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592.dir/all] Error 2
make[1]: Leaving directory '/tmp/tmpIrkvD92015-3-27-13-17_instant_1ef9db711550b03386498c672e5747052687d7a2/dolfin_compile_code_33a6cc7737aa67dc3fcd0eba77090b98e7c2c592'
Makefile:75: recipe for target 'all' failed
make: *** [all] Error 2
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