Dear Johannes, thank you very much for your reply.
This is my first time installing fenics on any platform so I have a lot
of questions unfortunately.
(My former PhD student worked with fenics on Ubuntu but not on cygwin.)
I haven't found a manual on installation so I am coming back to ask you
for more directions.
After I did
./install/fenics-install.sh local.yaml
I didn't get any errors so I assume it's correctly installed...
Then I did
$ source fenics.custom
And
$ python setup.py install
running install
running build
running build_scripts
running install_scripts
changing mode of
/home/Jing/.hashdist/bld/profile/cvu7wnv5cjao/bin/fenics-install-all.sh to
755
changing mode of
/home/Jing/.hashdist/bld/profile/cvu7wnv5cjao/bin/fenics-install-component.sh
to 755
changing mode of
/home/Jing/.hashdist/bld/profile/cvu7wnv5cjao/bin/fenics-install.sh to 755
changing mode of
/home/Jing/.hashdist/bld/profile/cvu7wnv5cjao/bin/fenics-release.sh to 755
running install_egg_info
Removing
/home/Jing/.hashdist/bld/profile/cvu7wnv5cjao/lib/python2.7/site-packages/fenics_developer_tools-1.5-py2.7.egg-info
Writing
/home/Jing/.hashdist/bld/profile/cvu7wnv5cjao/lib/python2.7/site-packages/fenics_developer_tools-1.5-py2.7.egg-info
And I checked
$ dolfin-version
1.5.0
Then I copied
$ cp
/home/Jing/.hashdist/bld/dolfin/ycxvnuxrkzth/share/dolfin/demo/documented/poisson/python/demo_poisson.py
.
And I tried the demo
$ python demo_poisson.py
Traceback (most recent call last):
File "demo_poisson.py", line 37, in <module>
from dolfin import *
File
"/home/Jing/.hashdist/bld/profile/cvu7wnv5cjao/lib/python2.7/site-packages/dolfin/__init__.py",
line 16, in <module>
from . import cpp
File
"/home/Jing/.hashdist/bld/profile/cvu7wnv5cjao/lib/python2.7/site-packages/dolfin/cpp/__init__.py",
line 42, in <module>
exec("from . import %s" % module_name)
File "<string>", line 1, in <module>
File
"/home/Jing/.hashdist/bld/profile/cvu7wnv5cjao/lib/python2.7/site-packages/dolfin/cpp/common.py",
line 132, in <module>
__pythonversion__ = "%d.%d.%d"%(tuple(map(int, [tmp[2], tmp[4],
tmp[6]])))
ValueError: invalid literal for int() with base 10: 'a'
So it's not getting the version number for python?
Could you guide me through this? I haven't been able to find detailed
installation instructions on the fenics website...
By the way, for running the C++ demos, I went into
$ cd
/home/Jing/.hashdist/bld/dolfin/ycxvnuxrkzth/share/dolfin/demo/documented/poisson/cpp/
and typed cmake . and make and ./demo_poisson.exe
and I get
$ ./demo_poisson.exe
Solving linear variational problem.
[Jing-PC:06712] *** Process received signal ***
[Jing-PC:06712] Signal: Segmentation fault (11)
[Jing-PC:06712] Signal code: (23)
[Jing-PC:06712] Failing at address: 0x234000
Unable to print stack trace!
[Jing-PC:06712] *** End of error message ***
Segmentation fault (core dumped)
Thank you so much for any help you can give me!
Sincerely, Jing-Rebecca Li
On 7/15/2015 1:45 PM, Johannes Ring wrote:
Hi,
I had FEniCS working on Cygwin earlier this year using HashDist. I
didn't use the fenics-install.sh script, but it is basically the same.
The problem you have with matplotlib looks like a patch that cannot be
applied to the version of matplotlib currently in hashstack. This is a
bug and I will report it.
To build without matplotlib, you can do the following:
git clone https://bitbucket.org/fenics-project/fenics-developer-tools.git
cd fenics-developer-tools
cp install/profiles/fenics.Cygwin.yaml local.yaml
Open local.yaml in your favorite editor and remove matplotlib and
anything else you don't need. Finally, run:
./install/fenics-install.sh local.yaml
Note that the profile (fenics.Cygwin.yaml) assumes that you have at
least cmake, blas, lapack, swig, pkg-config, opengl headers and gcc
already installed with Cygwin (I don't have the complete list
unfortunately).
Johannes
On Mon, Jul 13, 2015 at 12:21 PM Jing-Rebecca Li
<[email protected] <mailto:[email protected]>> wrote:
Hello, I am trying to install fenics on cygwin 64bit running on
Window 7.
I just downloaded cygwin last week so I think all the packages are
up to date (gcc, etc).
I tried out the script
wget -O - http://fenicsproject.org/fenics-install.sh | bash
and it was successful in installing a lot of components of fenics,
ffc (I needed to add swig to cygwin), vkt (I needed to add opengl,
etc), but I am stuck on matplotlib. Below is the build.log. By
the way, is it possible to provide only the core components of
fenics in a build, without all the visualization? I just would
like to solve the PDE and save the solution so I'd like to avoid
installing anything extra.
Thank you in advance for your help. I've already gotten much
further with installing fenics on cygwin with this new script than
all my previous attempts of the past years! Sincerely,
Jing-Rebecca Li
2015/07/12 08:26:59 - INFO: [package:run_job] running
[u'/bin/bash', '_hashdist/build.sh']
2015/07/12 08:26:59 - INFO: [package:run_job] environment:
2015/07/12 08:26:59 - INFO: [package:run_job] {'ARTIFACT':
u'//home/Jing//.hashdist/bld/matplotlib/ayvuahxambp7',
2015/07/12 08:26:59 - INFO: [package:run_job] 'BASH':
u'/bin/bash',
2015/07/12 08:26:59 - INFO: [package:run_job] 'BUILD':
u'//home/Jing//.hashdist/tmp/matplotlib-ayvuahxambp7-4',
2015/07/12 08:26:59 - INFO: [package:run_job] u'BZIP2_DIR':
u'//home/Jing//.hashdist/bld/bzip2/bxiszvx5g3ps',
2015/07/12 08:26:59 - INFO: [package:run_job] u'BZIP2_ID':
u'bzip2/bxiszvx5g3psquw42azpe3q3odi4gkl7',
2015/07/12 08:26:59 - INFO: [package:run_job] u'FREETYPE_DIR':
u'//home/Jing//.hashdist/bld/freetype/dg2tfjnamcnz',
2015/07/12 08:26:59 - INFO: [package:run_job] u'FREETYPE_ID':
u'freetype/dg2tfjnamcnzfcy2jkkzlmuyjoeyh4j3',
2015/07/12 08:26:59 - INFO: [package:run_job]
'HASHDIST_CPU_COUNT': '4',
2015/07/12 08:26:59 - INFO: [package:run_job] 'HDIST_CONFIG':
'{"gc_roots":"//home/Jing//.hashdist/gcroots","build_stores":[{"dir":"//home/Jing//.hashdist/bld"}],"source_caches":[{"dir":"//home/Jing//.hashdist/src"}],"cache":"//home/Jing//.hashdist/cache","build_temp":"//home/Jing//.hashdist/tmp"}',
2015/07/12 08:26:59 - INFO: [package:run_job] 'HDIST_IMPORT':
u'bzip2/bxiszvx5g3psquw42azpe3q3odi4gkl7
freetype/dg2tfjnamcnzfcy2jkkzlmuyjoeyh4j3
numpy/nzwmnt25foajpcv665tqebacyoxem6vw
pkg-config/satmw7zew7c2iuseoajzctg57hgubgjb
png/nhgc5kurctteaj6b3z7ajjrzlgtueo4l
python/qlvjlzdbishmango7jzlj5b2nnx7qr7q
setuptools/v3ljecso2k6ln5omin6zxb5326v3cug5
zlib/5oalmcorn2mrgjvqsdqij2g2t3eo4hro',
2015/07/12 08:26:59 - INFO: [package:run_job]
'HDIST_IMPORT_PATHS':
u'//home/Jing//.hashdist/bld/bzip2/bxiszvx5g3ps://home/Jing//.hashdist/bld/freetype/dg2tfjnamcnz://home/Jing//.hashdist/bld/numpy/nzwmnt25foaj://home/Jing//.hashdist/bld/pkg-config/satmw7zew7c2://home/Jing//.hashdist/bld/png/nhgc5kurctte://home/Jing//.hashdist/bld/python/qlvjlzdbishm://home/Jing//.hashdist/bld/setuptools/v3ljecso2k6l://home/Jing//.hashdist/bld/zlib/5oalmcorn2mr',
2015/07/12 08:26:59 - INFO: [package:run_job] 'HDIST_VIRTUALS': '',
2015/07/12 08:26:59 - INFO: [package:run_job] u'NUMPY_DIR':
u'//home/Jing//.hashdist/bld/numpy/nzwmnt25foaj',
2015/07/12 08:26:59 - INFO: [package:run_job] u'NUMPY_ID':
u'numpy/nzwmnt25foajpcv665tqebacyoxem6vw',
2015/07/12 08:26:59 - INFO: [package:run_job] 'PATH':
u'//home/Jing//.hashdist/bld/freetype/dg2tfjnamcnz/bin:/usr/bin:/bin',
2015/07/12 08:26:59 - INFO: [package:run_job] u'PKG_CONFIG_DIR':
u'//home/Jing//.hashdist/bld/pkg-config/satmw7zew7c2',
2015/07/12 08:26:59 - INFO: [package:run_job]
'PKG_CONFIG_EXECUTABLE': u'/usr/bin/pkgconfig',
2015/07/12 08:26:59 - INFO: [package:run_job] u'PKG_CONFIG_ID':
u'pkg-config/satmw7zew7c2iuseoajzctg57hgubgjb',
2015/07/12 08:26:59 - INFO: [package:run_job] 'PKG_CONFIG_PATH':
u'//home/Jing//.hashdist/bld/png/nhgc5kurctte/lib/pkgconfig://home/Jing//.hashdist/bld/freetype/dg2tfjnamcnz/lib/pkgconfig',
2015/07/12 08:26:59 - INFO: [package:run_job] u'PNG_DIR':
u'//home/Jing//.hashdist/bld/png/nhgc5kurctte',
2015/07/12 08:26:59 - INFO: [package:run_job] u'PNG_ID':
u'png/nhgc5kurctteaj6b3z7ajjrzlgtueo4l',
2015/07/12 08:26:59 - INFO: [package:run_job] 'PWD':
u'//home/Jing//.hashdist/tmp/matplotlib-ayvuahxambp7-4',
2015/07/12 08:26:59 - INFO: [package:run_job] 'PYTHON':
u'//home/Jing//.hashdist/bld/python/qlvjlzdbishm/bin/python',
2015/07/12 08:26:59 - INFO: [package:run_job] 'PYTHONPATH':
u'//home/Jing//.hashdist/bld/setuptools/v3ljecso2k6l/lib/python2.7/site-packages://home/Jing//.hashdist/bld/numpy/nzwmnt25foaj/lib/python2.7/site-packages',
2015/07/12 08:26:59 - INFO: [package:run_job] u'PYTHON_DIR':
u'//home/Jing//.hashdist/bld/python/qlvjlzdbishm',
2015/07/12 08:26:59 - INFO: [package:run_job] u'PYTHON_ID':
u'python/qlvjlzdbishmango7jzlj5b2nnx7qr7q',
2015/07/12 08:26:59 - INFO: [package:run_job] u'SETUPTOOLS_DIR':
u'//home/Jing//.hashdist/bld/setuptools/v3ljecso2k6l',
2015/07/12 08:26:59 - INFO: [package:run_job] u'SETUPTOOLS_ID':
u'setuptools/v3ljecso2k6ln5omin6zxb5326v3cug5',
2015/07/12 08:26:59 - INFO: [package:run_job] u'ZLIB_DIR':
u'//home/Jing//.hashdist/bld/zlib/5oalmcorn2mr',
2015/07/12 08:26:59 - INFO: [package:run_job] u'ZLIB_ID':
u'zlib/5oalmcorn2mrgjvqsdqij2g2t3eo4hro'}
2015/07/12 08:26:59 - INFO: [package:run_job] patching file
lib/matplotlib/tri/_tri.cpp
2015/07/12 08:26:59 - INFO: [package:run_job] Reversed (or
previously applied) patch detected! Assume -R? [n]
2015/07/12 08:26:59 - INFO: [package:run_job] Apply anyway? [n]
2015/07/12 08:26:59 - INFO: [package:run_job] Skipping patch.
2015/07/12 08:26:59 - INFO: [package:run_job] 1 out of 1 hunk
ignored -- saving rejects to file lib/matplotlib/tri/_tri.cpp.rej
2015/07/12 08:26:59 - INFO: [package:run_job] patching file
lib/matplotlib/tri/_tri.h
2015/07/12 08:26:59 - INFO: [package:run_job] Reversed (or
previously applied) patch detected! Assume -R? [n]
2015/07/12 08:26:59 - INFO: [package:run_job] Apply anyway? [n]
2015/07/12 08:26:59 - INFO: [package:run_job] Skipping patch.
2015/07/12 08:26:59 - INFO: [package:run_job] 1 out of 1 hunk
ignored -- saving rejects to file lib/matplotlib/tri/_tri.h.rej
2015/07/12 08:26:59 - ERROR: [package:run_job] Command
'[u'/bin/bash', '_hashdist/build.sh']' returned non-zero exit
status 1
2015/07/12 08:26:59 - ERROR: [package:run_job] command failed
(code=1); raising
--
Jing-Rebecca Li
Research Scientist
INRIA Saclay-Equipe DEFI
CMAP, Ecole Polytechnique
Route de Saclay, 91128, Palaiseau Cedex, France
+33-(0)6-42-07-12-49
[email protected] <mailto:[email protected]>
http://www.cmap.polytechnique.fr/~jingrebeccali/ <http://www.cmap.polytechnique.fr/%7Ejingrebeccali/>
_______________________________________________
fenics-support mailing list
[email protected]
<mailto:[email protected]>
http://fenicsproject.org/mailman/listinfo/fenics-support
--
Jing-Rebecca Li
Research Scientist
INRIA Saclay-Equipe DEFI
CMAP, Ecole Polytechnique
Route de Saclay, 91128, Palaiseau Cedex, France
+33-(0)6-42-07-12-49
[email protected]
http://www.cmap.polytechnique.fr/~jingrebeccali/
_______________________________________________
fenics-support mailing list
[email protected]
http://fenicsproject.org/mailman/listinfo/fenics-support
