The issue has already been discovered, see http://fenicsproject.org/pipermail/fenics/2015-July/002875.html
Should we consider patching this by 1.6.1 release, Garth? Jan On Sat, 1 Aug 2015 19:00:39 -0400 "Charles Cook" <[email protected]> wrote: > Hello, > > > > I've been working on installing the fenics project onto an HPC and > thought this would also be a good time to upgrade to 1.6. After > installing 1.6 with hashdist the preconditioner I had been using > appears to no longer be available, bjacobi. > > > > I assume I am missing a dependency in PETSc? > > > > I am using a local profile, mostly to get around a server being > offline: > > > > extends: > > - file: linux.yaml > > > > packages: > > m4: > > launcher: > > cmake: > > python: > > link: shared > > mpi: > > use: mpich > > blas: > > use: openblas > > lapack: > > use: openblas > > hypre: > > with_openblas: true > > without_check: true > > petsc: > > build_with: | > > openblas, parmetis, scotch, suitesparse, superlu_dist, hypre > > download: | > > mumps, scalapack, blacs, ml, hypre, superlu, superlu_dista > > coptflags: -O2 > > link: shared > > debug: false > > swig: > > boost: > > toolset: gcc > > build_with: python > > ipython: > > matplotlib: > > ffc: > > fiat: > > instant: > > ufl: > > uflacs: > > slepc: > > url: > http://fenicsproject.org/pub/software/contrib/slepc-3.5.2.tar.gz > > dolfin: > > build_with: | > > openblas, hdf5, parmetis, petsc, petsc4py, suitesparse, scotch, > slepc, slepc4py, vtk, zlib > > mpi4py: > > mshr: > > > > > > Looking into the source: > https://bitbucket.org/fenics-project/dolfin/src/d50bf5ab9bb7c282b68c5d3c265b > e2660fedde19/dolfin/la/PETScPreconditioner.cpp?at=master > > > > It looks like the preconditioner should be there by default, though > it is missing from the descriptions > > > // Mapping from preconditioner string to PETSc > > const std::map<std::string, const PCType> > PETScPreconditioner::_methods > > = { {"default", ""}, > > {"ilu", PCILU}, > > {"icc", PCICC}, > > {"jacobi", PCJACOBI}, > > {"bjacobi", PCBJACOBI}, > > {"sor", PCSOR}, > > {"additive_schwarz", PCASM}, > > {"petsc_amg", PCGAMG}, > > #if PETSC_HAVE_HYPRE > > {"hypre_amg", PCHYPRE}, > > {"hypre_euclid", PCHYPRE}, > > {"hypre_parasails", PCHYPRE}, > > #endif > > #if PETSC_HAVE_ML > > {"amg", PCML}, > > {"ml_amg", PCML}, > > #elif PETSC_HAVE_HYPRE > > {"amg", PCHYPRE}, > > #endif > > {"none", PCNONE} }; > > > > > > // Mapping from preconditioner string to description string > const std::map<std::string, std::string> > PETScPreconditioner::_methods_descr > = { {"default", "default preconditioner"}, > {"ilu", "Incomplete LU factorization"}, > {"icc", "Incomplete Cholesky factorization"}, > {"sor", "Successive over-relaxation"}, > {"petsc_amg", "PETSc algebraic multigrid"}, > #if PETSC_HAVE_HYPRE > {"amg", "Algebraic multigrid"}, > {"hypre_amg", "Hypre algebraic multigrid (BoomerAMG)"}, > {"hypre_euclid", "Hypre parallel incomplete LU > factorization"}, {"hypre_parasails", "Hypre parallel sparse > approximate inverse"}, #endif > #if PETSC_HAVE_ML > {"ml_amg", "ML algebraic multigrid"}, > #endif > {"none", "No preconditioner"} }; > > > > Any suggestions would be appreciated. > > > > As an aside, thanks again for this project! I'm looking to defend > soon and this project has been critical to my research. > > > > Thank you, > > > > Charles > _______________________________________________ fenics-support mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics-support
