Hi,
Exception: Incompatible swig versions detected. UFC swig version is not
>the same as extension module swig version: '3.0.7' != '2.0.10'
It is possible that there is a cached compiled module handled using older
installation (and older SWIG in particular). You can purge the cache (if
you don't plan to use older version anymore) by
$ instant-clean
This helped me over that particular bump, thanks.
From a message in the compile log, I also installed a couple of
libraries that showed up as missing.
Now, I am stuck with the error messages (from compile.log)
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
cannot find -lvtkhdf5_hl
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
cannot find -lvtkhdf5
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
cannot find -lvtkzlib
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
cannot find -lvtkpng
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
cannot find -lvtkfreetype
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
cannot find -lvtkoggtheora
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
cannot find -lvtkjpeg
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
cannot find -lvtktiff
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
cannot find -lvtkexpat
collect2: error: ld returned 1 exit status
make[2]: ***
[_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.so] Fehler 1
make[2]: Leaving directory
`/tmp/tmpS9arro2015-8-11-23-17_instant_22af290d351b398658a0843dd58a1148d8bee643/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15'
make[1]: ***
[CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/all]
Fehler 2
make[1]: Leaving directory
`/tmp/tmpS9arro2015-8-11-23-17_instant_22af290d351b398658a0843dd58a1148d8bee643/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15'
make: *** [all] Fehler 2
Any idea where to get these from? I (re)installed everything with
'vtk' in the name from the Suse repository, but nothing appeared to
help. There is no file 'libvtkfreetype.so' in /usr/lib64/vtk in
the OpenSuse packages, it seems.
I also find a libvtkpng.so in a subdirectory of .hashdist, but that does
not appear to get picked up by the linker. The failing command is
attached (rather a long line...)
Regards
Thomas
/usr/bin/c++ -fPIC -fmessage-length=0 -grecord-gcc-switches
-fstack-protector -O2 -Wall -D_FORTIFY_SOURCE=2 -funwind-tables
-fasynchronous-unwind-tables -fpermissive -std=c++11 -Wno-deprecated
-fopenmp -O2 -shared
-Wl,-soname,_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.so
-o _dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.so
CMakeFiles/_dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15.dir/dolfin_compile_code_b75a7140f4b7f593c8d2e8c722e633c4711e3c15PYTHON_wrap.cxx.o
/usr/lib64/libdolfin.so.1.5.0 -lpython2.7 -lboost_filesystem-mt
-lboost_program_options-mt -lboost_system-mt -lboost_thread-mt
-lboost_iostreams-mt
/usr/lib64/slepc/3.4.3/linux-gnu-c-opt/lib64/libslepc.so
/usr/lib64/petsc/3.4.3/linux-gnu-c-opt/lib64/libpetsc.so -lumfpack -lamd
-lsuitesparseconfig -lrt -lblas -lcholmod -lcamd -lcolamd -lccolamd
-llapack -lgfortran -lpastix -lamd -lsuitesparseconfig -lrt -lblas
-lcholmod -lcamd -lcolamd -lccolamd -llapack -lgfortran -lpastix
-lcppunit -lvtkhdf5_hl -lvtkhdf5 -lvtkzlib -lvtkpng -lvtkfreetype
-lvtkoggtheora /usr/lib64/vtk/libvtkRenderingVolumeAMR.so.1
/usr/lib64/vtk/libvtkFiltersProgrammable.so.1
/usr/lib64/vtk/libvtkFiltersHyperTree.so.1
/usr/lib64/vtk/libvtkChartsCore.so.1
/usr/lib64/vtk/libvtkCommonColor.so.1 -lvtkjpeg -lvtktiff
/usr/lib64/vtk/libvtkDomainsChemistry.so.1 -lvtkexpat
/usr/lib64/vtk/libvtkRenderingFreeTypeOpenGL.so.1
/usr/lib64/vtk/libvtkGUISupportQtSQL.so.1 -lQtSql
/usr/lib64/vtk/libvtkIOSQL.so.1 /usr/lib64/vtk/libvtksqlite.so.1
-lpthread /usr/lib64/vtk/libvtkViewsGeovis.so.1
/usr/lib64/vtk/libvtkGeovisCore.so.1 /usr/lib64/vtk/libvtkproj4.so.1
/usr/lib64/vtk/libvtkIOMovie.so.1 -logg -ltheoraenc -ltheoradec
/usr/lib64/vtk/libvtkFiltersFlowPaths.so.1
/usr/lib64/vtk/libvtkFiltersGeneric.so.1
/usr/lib64/vtk/libvtkWrappingTools.a
/usr/lib64/vtk/libvtkWrappingJava.so.1
/usr/lib64/vtk/libvtkImagingStencil.so.1 -lvtkFiltersSMP
/usr/lib64/vtk/libvtkIOLSDyna.so.1 /usr/lib64/vtk/libvtkIOVideo.so.1
/usr/lib64/vtk/libvtkIOParallel.so.1 /usr/lib64/vtk/libvtkIONetCDF.so.1
/usr/lib64/vtk/libvtkFiltersSelection.so.1
/usr/lib64/vtk/libvtkGUISupportQtOpenGL.so.1 -lQtOpenGL -lvtklibxml2
/usr/lib64/vtk/libvtkViewsContext2D.so.1 /usr/lib64/vtk/libvtkIOAMR.so.1
/usr/lib64/vtk/libvtkFiltersAMR.so.1 -lvtkgl2ps -lvtkRenderingLIC
/usr/lib64/vtk/libvtkIOPLY.so.1 /usr/lib64/vtk/libvtkLocalExample.so.1
/usr/lib64/vtk/libvtkTestingRendering.so.1
/usr/lib64/vtk/libvtkInteractionImage.so.1
/usr/lib64/vtk/libvtkIOEnSight.so.1
/usr/lib64/vtk/libvtkRenderingLOD.so.1
/usr/lib64/vtk/libvtkWrappingPython27Core.so.1 -lpython2.7
/usr/lib64/vtk/libvtkImagingStatistics.so.1 -lvtkFiltersStatisticsGnuR
/usr/lib64/vtk/libvtkFiltersParallelImaging.so.1
/usr/lib64/vtk/libvtkFiltersParallel.so.1
/usr/lib64/vtk/libvtkParallelCore.so.1
/usr/lib64/vtk/libvtkIOExodus.so.1 /usr/lib64/vtk/libvtkexoIIc.so.1
/usr/lib64/vtk/libvtkIOXML.so.1
/usr/lib64/vtk/libvtkGUISupportQtWebkit.so.1
/usr/lib64/vtk/libvtkViewsQt.so.1 /usr/lib64/vtk/libvtkViewsInfovis.so.1
/usr/lib64/vtk/libvtkFiltersImaging.so.1
/usr/lib64/vtk/libvtkInfovisLayout.so.1
/usr/lib64/vtk/libvtkViewsCore.so.1
/usr/lib64/vtk/libvtkInteractionWidgets.so.1
/usr/lib64/vtk/libvtkFiltersModeling.so.1
/usr/lib64/vtk/libvtkRenderingAnnotation.so.1
/usr/lib64/vtk/libvtkImagingColor.so.1 -lQtWebKit -lQtXmlPatterns
/usr/lib64/vtk/libvtkIOInfovis.so.1 -lxml2
/usr/lib64/vtk/libvtkIOLegacy.so.1 /usr/lib64/vtk/libvtkInfovisCore.so.1
/usr/lib64/vtk/libvtkIOMINC.so.1 /usr/lib64/vtk/libvtkNetCDF_cxx.so.1
/usr/lib64/vtk/libvtkNetCDF.so.1 -lpthread -ldl -lm -lhdf5_hl -lhdf5 -lm
/usr/lib64/vtk/libvtkIOGeometry.so.1 /usr/lib64/vtk/libvtkjsoncpp.so.1
/usr/lib64/vtk/libvtkFiltersHybrid.so.1
/usr/lib64/vtk/libvtkRenderingQt.so.1
/usr/lib64/vtk/libvtkRenderingLabel.so.1
/usr/lib64/vtk/libvtkGUISupportQt.so.1 -lQtGui
/usr/lib64/vtk/libvtkInteractionStyle.so.1 -lQtNetwork -lQtCore
/usr/lib64/vtk/libvtkFiltersTexture.so.1
/usr/lib64/vtk/libvtkFiltersVerdict.so.1
/usr/lib64/vtk/libvtkverdict.so.1 /usr/lib64/vtk/libvtkIOImport.so.1
/usr/lib64/vtk/libvtkIOExport.so.1
/usr/lib64/vtk/libvtkRenderingGL2PS.so.1
/usr/lib64/vtk/libvtkRenderingContext2D.so.1
/usr/lib64/vtk/libvtkRenderingFreeType.so.1
/usr/lib64/vtk/libvtkftgl.so.1 -lfreetype -lgl2ps
/usr/lib64/vtk/libvtkImagingMorphological.so.1
/usr/lib64/vtk/libvtkImagingGeneral.so.1
/usr/lib64/vtk/libvtkImagingSources.so.1
/usr/lib64/vtk/libvtkRenderingImage.so.1
/usr/lib64/vtk/libvtkRenderingVolumeOpenGL.so.1
/usr/lib64/vtk/libvtkRenderingVolume.so.1
/usr/lib64/vtk/libvtkRenderingOpenGL.so.1
/usr/lib64/vtk/libvtkRenderingCore.so.1
/usr/lib64/vtk/libvtkFiltersExtraction.so.1
/usr/lib64/vtk/libvtkFiltersStatistics.so.1
/usr/lib64/vtk/libvtkImagingFourier.so.1
/usr/lib64/vtk/libvtkalglib.so.1
/usr/lib64/vtk/libvtkFiltersGeometry.so.1
/usr/lib64/vtk/libvtkFiltersSources.so.1
/usr/lib64/vtk/libvtkFiltersGeneral.so.1
/usr/lib64/vtk/libvtkCommonComputationalGeometry.so.1
/usr/lib64/vtk/libvtkFiltersCore.so.1
/usr/lib64/vtk/libvtkIOXMLParser.so.1 -lexpat
/usr/lib64/vtk/libvtkImagingHybrid.so.1
/usr/lib64/vtk/libvtkImagingCore.so.1 /usr/lib64/vtk/libvtkIOImage.so.1
/usr/lib64/vtk/libvtkIOCore.so.1 /usr/lib64/vtk/libvtkDICOMParser.so.1
/usr/lib64/vtk/libvtkmetaio.so.1 -ljpeg -lpng -lz -ltiff -lGL -lSM -lICE
-lX11 -lXext -lXt /usr/lib64/vtk/libvtkImagingMath.so.1
/usr/lib64/vtk/libvtkCommonExecutionModel.so.1
/usr/lib64/vtk/libvtkCommonDataModel.so.1
/usr/lib64/vtk/libvtkCommonMisc.so.1
/usr/lib64/vtk/libvtkCommonSystem.so.1
/usr/lib64/vtk/libvtkCommonTransforms.so.1
/usr/lib64/vtk/libvtkCommonMath.so.1
/usr/lib64/vtk/libvtkCommonCore.so.1 /usr/lib64/vtk/libvtksys.so.1 -ldl
-Wl,-rpath,/usr/lib64/slepc/3.4.3/linux-gnu-c-opt/lib64:/usr/lib64/petsc/3.4.3/linux-gnu-c-opt/lib64:/usr/lib64/vtk
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