Hello Jo,
thanks.
After trying several commands - I got the following to run
sudo ./install/fenics-install.sh ./install/profiles/fenics.Linux.yaml # I
removed ml from yaml file as you suggested.
However, I am still unable to succeed as I get below error.
Starting build...
Traceback (most recent call last):
File "../hashdist/bin/hit", line 9, in <module>
from hashdist.cli.main import command_line_entry_point,
help_on_exceptions
File "/tmp/fenics-install.l8WeWz/hashdist/hashdist/__init__.py", line 1,
in <module>
from .spec.hook_api import *
File "/tmp/fenics-install.l8WeWz/hashdist/hashdist/spec/__init__.py",
line 1, in <module>
from .builder import ProfileBuilder
File "/tmp/fenics-install.l8WeWz/hashdist/hashdist/spec/builder.py", line
2, in <module>
from . import package
File "/tmp/fenics-install.l8WeWz/hashdist/hashdist/spec/package.py", line
4, in <module>
from .utils import substitute_profile_parameters, to_env_var
File "/tmp/fenics-install.l8WeWz/hashdist/hashdist/spec/utils.py", line
2, in <module>
from .exceptions import ProfileError
File "/tmp/fenics-install.l8WeWz/hashdist/hashdist/spec/exceptions.py",
line 1, in <module>
from ..formats.marked_yaml import ValidationError
File
"/tmp/fenics-install.l8WeWz/hashdist/hashdist/formats/marked_yaml.py", line
17, in <module>
from hashdist.deps.yaml.error import Mark
File
"/tmp/fenics-install.l8WeWz/hashdist/hashdist/deps/yaml/__init__.py", line
2, in <module>
from error import *
ImportError: No module named 'error'
Command exited with non-zero status 1
real 0.05
user 0.04
sys 0.00
On Tue, Sep 1, 2015 at 8:36 AM, Johannes Ring <[email protected]> wrote:
> The problem is the same as reported here:
>
> https://bitbucket.org/fenics-project/fenics-developer-tools/issues/9/
>
> Johannes
>
>
> On Sat, Aug 29, 2015 at 1:05 PM ramki raman <[email protected]> wrote:
>
>> it is attached.
>> thank you
>> Ramki
>>
>> On Fri, Aug 28, 2015 at 7:56 AM, Johannes Ring <[email protected]> wrote:
>>
>>> Please send us the build.log file as an attachment.
>>>
>>> Johannes
>>>
>>>
>>> On Fri, Aug 28, 2015 at 2:44 AM ramki raman <[email protected]>
>>> wrote:
>>>
>>>> Hello Jo,
>>>> You were right. I followed your steps and now when I type
>>>> "python --version" I get
>>>> Python 2.7.10
>>>>
>>>> However, I am unable to complete the install now due to the following
>>>> error:
>>>>
>>>> [petsc|ERROR] Command '[u'/bin/bash', '_hashdist/build.sh']' returned
>>>> non-zero exit status 1
>>>> [petsc|ERROR] command failed (code=1); raising
>>>>
>>>> - also the install from the arch reposotory is not working because none
>>>> of the examples run.
>>>>
>>>>
>>>> thanks for your help.
>>>> Ramki
>>>>
>>>>
>>>> On Wed, Aug 26, 2015 at 2:51 AM, Johannes Ring <[email protected]>
>>>> wrote:
>>>>
>>>>> I said PATH, not PYTHONPATH. What do you get if you run "python
>>>>> --version"? Python 2 or 3? If it is 3, then the build script won't work
>>>>> since HashDist does not work with Python 3. In that case, you will have to
>>>>> make some changes such that when you call "python" you will get Python 2.
>>>>> For instance, something like the following should work:
>>>>>
>>>>> mkdir $HOME/bin
>>>>> ln -s /usr/bin/python2 $HOME/bin/python
>>>>> export PATH=$HOME/bin:$PATH
>>>>> python --version
>>>>>
>>>>> If the output from the last command is python 2.7, then you should be
>>>>> able to run the build script.
>>>>>
>>>>> Johannes
>>>>>
>>>>>
>>>>> On Tue, Aug 25, 2015 at 11:31 PM ramki raman <[email protected]>
>>>>> wrote:
>>>>>
>>>>>> Hello Jo,
>>>>>> I still get the same error after checking/ensuring python 2.7 is the
>>>>>> first one in the path.
>>>>>> Below is what appears when I run the 'enc' command
>>>>>>
>>>>>> PYTHONPATH=:/usr/lib/python2.7/site-packages/
>>>>>>
>>>>>> Any other possibilities
>>>>>> Thanks
>>>>>> Ramki
>>>>>>
>>>>>>
>>>>>> On Tue, Aug 25, 2015 at 11:40 AM, ramki kalyanaraman <
>>>>>> [email protected]> wrote:
>>>>>>
>>>>>>> Thank you Jo.
>>>>>>> I will try this install again soon.
>>>>>>> Ramki
>>>>>>>
>>>>>>> On Tue, 25 Aug 2015 09:53:24 +0000
>>>>>>> Johannes Ring <[email protected]> wrote:
>>>>>>>
>>>>>>> > Yes, the problem is that HashDist does not work with Python 3. You
>>>>>>> > should make sure that Python 2.7 is first in PATH before running
>>>>>>> the
>>>>>>> > build script.
>>>>>>> >
>>>>>>> > Johannes
>>>>>>> >
>>>>>>> > On Mon, Aug 3, 2015 at 12:05 AM ramki raman <[email protected]>
>>>>>>> > wrote:
>>>>>>> >
>>>>>>> > > Hello Jo,
>>>>>>> > > Any suggestions on how I can address the "ImportError: No module
>>>>>>> > > named 'error'" when I try to use the new install script:
>>>>>>> > >
>>>>>>> > > below is the output..
>>>>>>> > > thanks
>>>>>>> > >
>>>>>>> > > ramki
>>>>>>> > >
>>>>>>> > >
>>>>>>> > > Starting build...
>>>>>>> > > Traceback (most recent call last):
>>>>>>> > > File "../hashdist/bin/hit", line 9, in <module>
>>>>>>> > > from hashdist.cli.main import command_line_entry_point,
>>>>>>> > > help_on_exceptions
>>>>>>> > > File
>>>>>>> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/__init__.py",
>>>>>>> > > line 1, in <module>
>>>>>>> > > from .spec.hook_api import *
>>>>>>> > > File
>>>>>>> > > "/tmp/fenics-install.EwAt5k/hashdist/hashdist/spec/__init__.py",
>>>>>>> > > line 1, in <module> from .builder import ProfileBuilder
>>>>>>> > > File
>>>>>>> > > "/tmp/fenics-install.EwAt5k/hashdist/hashdist/spec/builder.py",
>>>>>>> > > line 2, in <module> from . import package
>>>>>>> > > File
>>>>>>> > > "/tmp/fenics-install.EwAt5k/hashdist/hashdist/spec/package.py",
>>>>>>> > > line 4, in <module> from .utils import
>>>>>>> > > substitute_profile_parameters, to_env_var File
>>>>>>> > > "/tmp/fenics-install.EwAt5k/hashdist/hashdist/spec/utils.py",
>>>>>>> line
>>>>>>> > > 2, in <module> from .exceptions import ProfileError
>>>>>>> > > File
>>>>>>> > >
>>>>>>> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/spec/exceptions.py",
>>>>>>> > > line 1, in <module> from ..formats.marked_yaml import
>>>>>>> > > ValidationError File
>>>>>>> > >
>>>>>>> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/formats/marked_yaml.py",
>>>>>>> > > line 17, in <module>
>>>>>>> > > from hashdist.deps.yaml.error import Mark
>>>>>>> > > File
>>>>>>> > >
>>>>>>> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/deps/yaml/__init__.py",
>>>>>>> > > line 2, in <module>
>>>>>>> > > from error import *
>>>>>>> > > ImportError: No module named 'error'
>>>>>>> > >
>>>>>>> > > On Thu, Jul 23, 2015 at 7:48 AM, ramki kalyanaraman
>>>>>>> > > <[email protected]> wrote:
>>>>>>> > >
>>>>>>> > >>
>>>>>>> > >> Thank you.
>>>>>>> > >> I tried this approach as well and am unable to install as I get
>>>>>>> > >> the below error.
>>>>>>> > >>
>>>>>>> > >> Starting build...
>>>>>>> > >> Traceback (most recent call last):
>>>>>>> > >> File "../hashdist/bin/hit", line 9, in <module>
>>>>>>> > >> from hashdist.cli.main import command_line_entry_point,
>>>>>>> > >> help_on_exceptions
>>>>>>> > >> File
>>>>>>> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/__init__.py",
>>>>>>> > >> line 1, in <module>
>>>>>>> > >> from .spec.hook_api import *
>>>>>>> > >> File
>>>>>>> > >> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/spec/__init__.py",
>>>>>>> > >> line 1, in <module> from .builder import ProfileBuilder
>>>>>>> > >> File
>>>>>>> > >> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/spec/builder.py",
>>>>>>> > >> line 2, in <module> from . import package
>>>>>>> > >> File
>>>>>>> > >> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/spec/package.py",
>>>>>>> > >> line 4, in <module> from .utils import
>>>>>>> > >> substitute_profile_parameters, to_env_var File
>>>>>>> > >> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/spec/utils.py",
>>>>>>> line
>>>>>>> > >> 2, in <module> from .exceptions import ProfileError
>>>>>>> > >> File
>>>>>>> > >>
>>>>>>> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/spec/exceptions.py",
>>>>>>> > >> line 1, in <module> from ..formats.marked_yaml import
>>>>>>> > >> ValidationError File
>>>>>>> > >>
>>>>>>> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/formats/marked_yaml.py",
>>>>>>> > >> line 17, in <module>
>>>>>>> > >> from hashdist.deps.yaml.error import Mark
>>>>>>> > >> File
>>>>>>> > >>
>>>>>>> "/tmp/fenics-install.EwAt5k/hashdist/hashdist/deps/yaml/__init__.py",
>>>>>>> > >> line 2, in <module>
>>>>>>> > >> from error import *
>>>>>>> > >> ImportError: No module named 'error'
>>>>>>> > >>
>>>>>>> > >> RK
>>>>>>> > >>
>>>>>>> > >>
>>>>>>> > >> On Thu, 23 Jul 2015 12:24:23 +0200
>>>>>>> > >> Johannes Neumann <[email protected]> wrote:
>>>>>>> > >>
>>>>>>> > >> > I had similar problems before but resolved them by using the
>>>>>>> > >> > brand new install script
>>>>>>> > >> > (
>>>>>>> > >>
>>>>>>> http://fenicsproject.org/download/#installation-from-source-fenics-install-sh
>>>>>>> > >> ).
>>>>>>> > >> > This will download and install all necessary software
>>>>>>> packages in
>>>>>>> > >> > your local home directory. after sourcing the generated file
>>>>>>> you
>>>>>>> > >> > should have a clean fenics install. if you need additional
>>>>>>> > >> > software, like scipy, you can add them to the platform file.
>>>>>>> > >> >
>>>>>>> > >> > Hope this helps,
>>>>>>> > >> > Jo (N.)
>>>>>>> > >> >
>>>>>>> > >> > Am 22.07.2015 um 21:26 schrieb ramki kalyanaraman:
>>>>>>> > >> > > Dear users,
>>>>>>> > >> > > I have attempted to get dolfin running on arch linux. after
>>>>>>> > >> > > unsuccessfully trying to install the fenics-git and
>>>>>>> dolfin-git
>>>>>>> > >> > > from the arch user repository I resorted to the manual
>>>>>>> > >> > > installation given at
>>>>>>> > >> > >
>>>>>>> http://fenicsproject.org/download/installation_from_source.html
>>>>>>> > >> > >
>>>>>>> > >> > >
>>>>>>> > >> > > After also unsuccessfully trying to install systemwide (can
>>>>>>> > >> > > send the details if needed later) I was able to install in a
>>>>>>> > >> > > local directory. However, when I try to run any of the demo
>>>>>>> > >> > > files, I get the below messages - is this somehow related to
>>>>>>> > >> > > python3.4 or is it something else. thanks
>>>>>>> > >> > > RK
>>>>>>> > >> > >
>>>>>>> > >> > >
>>>>>>> > >> > > /usr/bin/python3.4
>>>>>>> > >> > >
>>>>>>> ~/FENICS/share/dolfin/demo/documented/periodic/python/demo_periodic.py
>>>>>>> > >> > > Traceback (most recent call last): File
>>>>>>> > >> > >
>>>>>>> > >>
>>>>>>> "/home/rk/FENICS/share/dolfin/demo/documented/periodic/python/demo_periodic.py",
>>>>>>> > >> > > line 34, in <module> from dolfin import * File
>>>>>>> > >> > >
>>>>>>> "/home/rk/FENICS/lib/python2.7/site-packages/dolfin/__init__.py",
>>>>>>> > >> > > line 16, in <module> from . import cpp File
>>>>>>> > >> > >
>>>>>>> "/home/rk/FENICS/lib/python2.7/site-packages/dolfin/cpp/__init__.py",
>>>>>>> > >> > > line 42, in <module> exec("from . import %s" % module_name)
>>>>>>> > >> > > File "<string>", line 1, in <module> File
>>>>>>> > >> > >
>>>>>>> "/home/rk/FENICS/lib/python2.7/site-packages/dolfin/cpp/common.py",
>>>>>>> > >> > > line 32, in <module> _common = swig_import_helper() File
>>>>>>> > >> > >
>>>>>>> "/home/rk/FENICS/lib/python2.7/site-packages/dolfin/cpp/common.py",
>>>>>>> > >> > > line 28, in swig_import_helper _mod =
>>>>>>> > >> > > imp.load_module('_common', fp, pathname, description) File
>>>>>>> > >> > > "/usr/lib/python3.4/imp.py", line 243, in load_module return
>>>>>>> > >> > > load_dynamic(name, filename, file) ImportError:
>>>>>>> > >> > > libdolfin.so.1.5: cannot open shared object file: No such
>>>>>>> file
>>>>>>> > >> > > or directory
>>>>>>> > >> > >
>>>>>>> > >> > > Process finished with exit code 1
>>>>>>> > >> > > _______________________________________________
>>>>>>> > >> > > fenics-support mailing list
>>>>>>> > >> > > [email protected]
>>>>>>> > >> > > http://fenicsproject.org/mailman/listinfo/fenics-support
>>>>>>> > >> >
>>>>>>> > >>
>>>>>>> > >>
>>>>>>> > >>
>>>>>>> > >> --
>>>>>>> > >> Ramki Kalyanaraman
>>>>>>> > >> Professor
>>>>>>> > >> Materials Science and Eng. &
>>>>>>> > >> Chemical and Biomolecular Eng.
>>>>>>> > >> 419 Ferris Hall,
>>>>>>> > >> University of Tennessee
>>>>>>> > >> Knoxville, TN 37996-2200
>>>>>>> > >> ph/fax: 865-974-5539/4115
>>>>>>> > >> email: [email protected]
>>>>>>> > >> web:http://web.utk.edu/~ramki
>>>>>>> > >>
>>>>>>> > >>
>>>>>>> > > _______________________________________________
>>>>>>> > > fenics-support mailing list
>>>>>>> > > [email protected]
>>>>>>> > > http://fenicsproject.org/mailman/listinfo/fenics-support
>>>>>>> > >
>>>>>>>
>>>>>>>
>>>>>>
>>>>
>>
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