Hi,
I am an PhD student using Fenics for my thesis and we are trying to
installing FEnics also on our cluster (LPGN, University of Nantes). I
would like to ask you a question regarding this installation.
Exist there a way how to tell Fenics that he doesn't have to start the
installation from beginning? And that he can start the installation from
the point where he stopped the last time by for example giving him
what's still missing?
For example: fenics-install.sh downloads lot of thing, most of them
already exists on the cluster. But he doesn't look for them, he just
starts from the beginning. However sometimes the distant server doesn't
respond quickly enough and everything stops. At this point we would like
to start from the point where we stopped before.
I am also attaching a text file with an example of this problem.
Thank you very much for your time,
Katerina Sladkova
Created temporary directory /tmp/fenics-install.V3kHAR for FEniCS installation.
Downloading HashDist...
Clonage dans 'hashdist'...
remote: Counting objects: 5466, done.
remote: Total 5466 (delta 0), reused 0 (delta 0), pack-reused 5466
Réception d'objets: 100% (5466/5466), 2.40 MiB | 540.00 KiB/s, fait.
Résolution des deltas: 100% (3402/3402), fait.
Vérification de la connectivité... fait.
Downloading HashStack...
Clonage dans 'hashstack'...
remote: Counting objects: 8172, done.
remote: Compressing objects: 100% (5/5), done.
remote: Total 8172 (delta 1), reused 0 (delta 0), pack-reused 8167
Réception d'objets: 100% (8172/8172), 1.58 MiB | 19.00 KiB/s, fait.
Résolution des deltas: 100% (4974/4974), fait.
Vérification de la connectivité... fait.
Downloading FEniCS Install...
Clonage dans 'fenics-developer-tools'...
remote: Counting objects: 488, done.
remote: Compressing objects: 100% (483/483), done.
remote: Total 488 (delta 328), reused 0 (delta 0)
Réception d'objets: 100% (488/488), 133.35 KiB | 134.00 KiB/s, fait.
Résolution des deltas: 100% (328/328), fait.
Vérification de la connectivité... fait.
patching file pkgs/petsc/petsc.py
Hunk #1 succeeded at 117 with fuzz 2 (offset 37 lines).
patching file pkgs/petsc/petsc.yaml
patching file pkgs/dolfin/dolfin-cmake-find_path.patch
patching file pkgs/dolfin/dolfin.yaml
patching file pkgs/dolfin/dolfin.yaml
patching file pkgs/ffc.yaml
patching file pkgs/fiat.yaml
patching file pkgs/instant.yaml
patching file pkgs/mshr.yaml
patching file pkgs/ufl.yaml
patching file pkgs/uflacs.yaml
patching file pkgs/petsc/petsc.yaml
Hunk #1 succeeded at 2 with fuzz 2.
patching file pkgs/superlu_dist/make.inc.darwin
patching file pkgs/superlu_dist/make.inc.linux
patching file pkgs/superlu_dist/superlu_dist.yaml
patching file pkgs/petsc4py/petsc4py.yaml
patching file pkgs/slepc.yaml
patching file pkgs/slepc4py.yaml
patching file pkgs/superlu_dist/make.inc.linux
Ready to build FEniCS. This may take about 2 hours.
The following build types are supported:
[0] development version of FEniCS [default]
[1] latest stable version of FEniCS, currently 1.6
[2] only dependencies, including e.g. MPI, PETSc, Swig, Boost
Please select build type [0, 1, 2]:
1
Using HashDist profile
/tmp/fenics-install.V3kHAR/fenics-developer-tools/install/profiles/fenics.Linux.yaml.
Stable build requested.
Starting build...
/tmp/fenics-install.V3kHAR/hashdist/hashdist/formats/marked_yaml.py:72:
DeprecationWarning: object.__init__() takes no parameters
cls.__init__(self, x)
Downloading
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Downloading https://github.com/xianyi/OpenBLAS/archive/v0.2.13.tar.gz...
[ERROR] Unhandled Exception in Download: zero length field name in format
Downloading https://github.com/xianyi/OpenBLAS/archive/v0.2.13.tar.gz...
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Downloading
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Downloading http://ftp.heanet.ie/mirrors/gnu/gdbm/gdbm-1.11.tar.gz...
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[gdbm] Building gdbm/xqni5hcjx43a, follow log with:
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Downloading
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Downloading http://bzip.org/1.0.6/bzip2-1.0.6.tar.gz...
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[bzip2] Building bzip2/yhn7t7sdxdfd, follow log with:
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Downloading http://ftp.gnu.org/gnu/m4/m4-1.4.17.tar.bz2...
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[lapack] Building lapack/vwdn72phzwm3, follow log with:
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Downloading
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Downloading http://ftpmirror.gnu.org/libidn/libidn-1.28.tar.gz...
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[openblas] Building openblas/5cv367fw27jc, follow log with:
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Downloading http://downloads.sourceforge.net/project/flex/flex-2.5.39.tar.bz2...
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[ncurses] Building ncurses/rrad4h2o6kbn, follow log with:
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Downloading http://ftp.gnu.org/gnu/readline/readline-6.2.tar.gz...
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[readline] Building readline/pvc7uwqnfry6, follow log with:
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Downloading https://sqlite.org/2013/sqlite-autoconf-3071700.tar.gz...
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[sqlite] Building sqlite/aebydrnskkcm, follow log with:
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Downloading http://download.zeromq.org/zeromq-3.2.4.tar.gz...
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[launcher] Building launcher/wvmh5uvayzv3, follow log with:
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Downloading
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[ERROR] urllib failed to download (code: 404):
http://downloads.sourceforge.net/project/libpng/zlib/1.2.8/zlib-1.2.8.tar.gz
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[ERROR] urllib failed to download (code: 404):
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Downloading http://xmlsoft.org/sources/libxml2-2.9.1.tar.gz...
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Downloading http://download.osgeo.org/libtiff/tiff-4.0.3.tar.gz...
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Downloading
http://sourceforge.net/projects/libpng/files/libpng16/older-releases/1.6.14/libpng-1.6.14.tar.gz...
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Downloading http://ftp.gnu.org/gnu/bison/bison-3.0.tar.gz...
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Downloading http://ftp.gnu.org/gnu/sed/sed-4.2.tar.bz2...
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Downloading http://mirrors.kernel.org/gnu/gmp/gmp-6.0.0a.tar.bz2...
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Downloading http://www.mpfr.org/mpfr-3.1.2/mpfr-3.1.2.tar.bz2...
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Downloading http://www.mpich.org/static/tarballs/3.0.3/mpich-3.0.3.tar.gz...
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Downloading
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Downloading
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[scotch] Building scotch/vm3qczcxeszc, follow log with:
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Downloading https://www.openssl.org/source/openssl-1.0.1g.tar.gz...
[ERROR] urllib failed to download (reason: [Errno 8] _ssl.c:491: EOF occurred
in violation of protocol): https://www.openssl.org/source/openssl-1.0.1g.tar.gz
Downloading https://www.openssl.org/source/openssl-1.0.1g.tar.gz...
[ERROR] urllib failed to download (reason: [Errno 8] _ssl.c:491: EOF occurred
in violation of protocol): https://www.openssl.org/source/openssl-1.0.1g.tar.gz
Downloading https://www.openssl.org/source/openssl-1.0.1g.tar.gz...
[ERROR] urllib failed to download (reason: [Errno 8] _ssl.c:491: EOF occurred
in violation of protocol): https://www.openssl.org/source/openssl-1.0.1g.tar.gz
[CRITICAL] You may wish to check your Internet connection or the remote server
gmoebs@Erdre-m:/work/users/gmoebs/SOFT/FENICS> ll
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