Le 24/09/2015 16:26, Johannes Ring a écrit :
Did you build PETSc manually?
yes, I find its temporary directory, ~/.hashdist/tmp/petsc-labtr2b5ktog,
and I launch the configure in it with options for finding MPI, BLAS and
LAPack already built by fenics.
It is easier if you let fenics-install.sh do it. If it fails to
download ml, then just remove it from the profile (local.yaml). We can
try to add it back later if you need PETSc with ml.
OK, I remove ml from the files list to be download. I relaunch
fenics-install.sh
Now, It fails for scalapack that it is unable to download. Should I
remove it too from the dependance list in the local.yaml file ?
Regards
Guy.
Johannes
On Thu, Sep 24, 2015 at 3:45 PM Guy Moebs <[email protected]
<mailto:[email protected]>> wrote:
Hello Johannes,
Thank you for your message. It greatly helps me to go further. Now
I encounter a problem inside the installation of PETSc.
At configure step, it can't download ML, ie. ml-6.2-p2.tar.gz and
propose to download it manually in order to use the configure
option : --download-ml=/yourselectedlocation/ml-6.2-p2.tar.gz
as a workaround.
I try this and it works. I have compiled PETSc.
Now, if I come back to fenics, how can I tell it that there is a
compiled PETSc next to it and to use it ?
If I relaunch the installation script of fenics, that is,
./install/fenics-install.sh , it begins a new installation of
PETSc, just next to the right one with the same error about
downloading ML.
Regards,
Guy.
Le 23/09/2015 09:25, Johannes Ring a écrit :
On Tue, Sep 22, 2015 at 3:43 PM Guy Moebs
<[email protected] <mailto:[email protected]>> wrote:
Hi Johannes,
I'd like our users to be able to run fenics on our cluster.
So a runable version first, and next a maybe more optimized one.
"gcc", /usr/bin/gcc, is version 4.3 of the GNU compiler.
We have version 4.7 as /usr/bin/gcc-4.7
Where is the hashdist profile file in order to modify the gcc
default name ?
You will have to create the hashdist profile, either from scratch
or by modifying an existing profile. There are profiles that you
can use in hashstack and in fenics-developer-tools. You can for
example do the following:
git clone
https://bitbucket.org/fenics-project/fenics-developer-tools.git
cd fenics-developer-tools
cp install/profiles/fenics.Linux.yaml local.yaml
Now, open local.yaml and add something like the following:
parameters:
PROLOGUE: |
export CC=/usr/bin/gcc-4.7; export CXX=/usr/bin/g++-4.7;
export FC=/usr/bin/gfortran-4.7
To use OpenMPI instead of MPICH, replace
mpi:
use: mpich
with this:
mpi:
use: openmpi
When you are satisfied with your profile, run
./install/fenics-install.sh
The fenics-install.sh script will detect and use your local.yaml
profile.
Note that you should set the same variables when
compiling/running FEniCS programs as you do in the PROLOGUE. In
the case above, this will be
source fenics.custom
export CC=/usr/bin/gcc-4.7
export CXX=/usr/bin/g++-4.7
export FC=/usr/bin/gfortran-4.7
Johannes
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