2014-07-02 12:40 GMT+02:00 Marco Morandini <[email protected]>: > I tried to build mshr from git. > > I had to modify CMakeCache: > > 1) my Vtk is installed in a non-standard location > 2) it was not finding numpy's headers > 2) it was selecting python 3 and not python 2, and then > complaining because no definition of PyInt_FromSsize_t > was provided. > > Patch attached. The numpy detection script is copied verbatim from Dolfin's > sources. > > > After that, the compilation is ok, but the demos do not work. > > Some of them because the number of arguments of the init functions is wrong > (e.g. simple-csg-3D.py: > TypeError: new_Box expected 2 arguments, got 6 > )
This is fixed now. > > others because of CGAL (e.g. icecream.py): > > ----------- > marco@pao:~/Programmi/Dolphin/src_from_dorsal/mshr/demo/python (master>)> > python icecream.py > Convert to nef polyhedron > Number of vertices: 826 > Number of facets: 1648 > Cleaning degenerate facets > Collapsing short edges > Removing colinear facets by edge flipping > Writing to file: icecream.off > Convert to nef polyhedron > Number of vertices: 826 > Number of facets: 1648 > Cleaning degenerate facets > Collapsing short edges > Removing colinear facets by edge flipping > Traceback (most recent call last): > File "icecream.py", line 41, in <module> > m = generate_mesh(geometry, 16, "cgal") > File "/home/marco/local/Fenics/lib64/python2.7/site-packages/mshr.py", > line 458, in generate_mesh > _generate(m, geometry, resolution, backend) > StandardError: CGAL ERROR: assertion violation! > Expr: check_protocoll == 2 > File: > /home/marco/Programmi/Dolphin/src_from_dorsal/mshr/dorsal_build_dir/CGAL-4.4-installdir/include/CGAL/Polyhedron_incremental_builder_3.h > Line: 286 > ------------- > > Any hint? Did you build Dolfin with CGAL support? mshr builds its own CGAL and think this is bug in the build script that causes the linker to pick up the "wrong" CGAL. I will take a look. As a workaround, build Dolfin without CGAL support. (CGAL is used only for mesh generation in Dolfin, and will be removed soon, so you don't loose anything with this). Please report back if this does not solve the problem. Regards Benjamin > > Thanks in advance, > > Marco > > _______________________________________________ > fenics mailing list > [email protected] > http://fenicsproject.org/mailman/listinfo/fenics > _______________________________________________ fenics mailing list [email protected] http://fenicsproject.org/mailman/listinfo/fenics
