This looks like just a warning to me. The permission denied error you get when running make install is because it tries to write to /usr. You probably want to install to a different directory. Please see the following page for info about how to do that:
http://fenicsproject.org/download/installation_from_source.html#installation-from-source Johannes On Oct 9, 2014 10:25 PM, "André Timótheo" <[email protected]> wrote: > During make phase the error message: > > Linking CXX shared module _fem.so > [100%] Built target _fem > [100%] Swig source > Scanning dependencies of target _common > [100%] Building CXX object > dolfin/swig/modules/common/CMakeFiles/_common.dir/modulePYTHON_wrap.cxx.o > /home/parallels/dolfin-master/build/dolfin/swig/modules/common/modulePYTHON_wrap.cxx:2963:21: > warning: invalid suffix on literal; C++11 requires a space between literal > and identifier [-Wliteral-suffix] > "in method '" name"', argument "argn" of type '"type"'" > ^ > /home/parallels/dolfin-master/build/dolfin/swig/modules/common/modulePYTHON_wrap.cxx:2963:39: > warning: invalid suffix on literal; C++11 requires a space between literal > and identifier [-Wliteral-suffix] > "in method '" name"', argument "argn" of type '"type"'" > ^ > /home/parallels/dolfin-master/build/dolfin/swig/modules/common/modulePYTHON_wrap.cxx:2965:3: > warning: invalid suffix on literal; C++11 requires a space between literal > and identifier [-Wliteral-suffix] > "invalid null reference "SWIG_ArgFail_Fmt(type, name, argn) > ^ > /home/parallels/dolfin-master/build/dolfin/swig/modules/common/modulePYTHON_wrap.cxx:2967:3: > warning: invalid suffix on literal; C++11 requires a space between literal > and identifier [-Wliteral-suffix] > "in method '"name"', output value of type '"type"'" > ^ > /home/parallels/dolfin-master/build/dolfin/swig/modules/common/modulePYTHON_wrap.cxx:2967:20: > warning: invalid suffix on literal; C++11 requires a space between literal > and identifier [-Wliteral-suffix] > "in method '"name"', output value of type '"type"'" > ^ > Linking CXX shared module _common.so > > > 2014-10-09 13:57 GMT-03:00 André Timótheo <[email protected]>: > >> I follow the instructions. >> >> cmake -DDOLFIN_ENABLE_CGAL:BOOL=OFF .. >> make >> make install >> >> After the make install another bug >> >> 100%] Built target _fem >> [100%] Built target _common >> Install the project... >> -- Install configuration: "RelWithDebInfo" >> -- Installing: /usr/lib/python2.7/dist-packages/dolfin >> CMake Error at cmake_install.cmake:44 (FILE): >> file INSTALL cannot set permissions on >> "/usr/lib/python2.7/dist-packages/dolfin" >> >> >> make: *** [install] Error 1 >> >> >> 2014-10-09 3:33 GMT-03:00 Johannes Ring <[email protected]>: >> >> In the build directory, run >>> >>> cmake -DDOLFIN_ENABLE_CGAL:BOOL=OFF .. >>> make >>> make install >>> >>> Johannes >>> >>> On Wed, Oct 8, 2014 at 11:45 PM, André Timótheo <[email protected]> >>> wrote: >>> > I have to put this comand - DDOLFIN_ENABLE_CGAL:BOOL=OFF >>> > on make install? >>> > >>> > On [ 89%] Building CXX object >>> > dolfin/CMakeFiles/dolfin.dir/generation/CSGCGALMeshGenerator3D.cpp. >>> there is >>> > another bug: >>> > >>> > c++: internal compiler error: Killed (program cc1plus) >>> > Please submit a full bug report, >>> > with preprocessed source if appropriate. >>> > See <file:///usr/share/doc/gcc-4.8/README.Bugs> for instructions. >>> > make[2]: *** >>> > [dolfin/CMakeFiles/dolfin.dir/generation/CSGCGALMeshGenerator3D.cpp.o] >>> Error >>> > 4 >>> > make[1]: *** [dolfin/CMakeFiles/dolfin.dir/all] Error 2 >>> > make: *** [all] Error 2 >>> > >>> > 2014-10-08 12:51 GMT-03:00 Johannes Ring <[email protected]>: >>> > >>> >> Yes, you need more to compile with CGAL. To disable CGAL, run >>> >> >>> >> cmake - DDOLFIN_ENABLE_CGAL:BOOL=OFF.. >>> >> >>> >> Johannes >>> >> >>> >> On Oct 8, 2014 5:46 PM, "André Timótheo" <[email protected]> >>> wrote: >>> >>> >>> >>> I put 3.5 gb of RAM in ubuntu 14 virtual machine inside os x. Do you >>> >>> think that >>> >>> I need more? >>> >>> >>> >>> Where I disable CGAL? >>> >>> >>> >>> Thank you very much man. >>> >>> >>> >>> A >>> >>> >>> >>> Em quarta-feira, 8 de outubro de 2014, Johannes Ring < >>> [email protected]> >>> >>> escreveu: >>> >>>> >>> >>>> My guess is that you don't have enough memory to compile DOLFIN with >>> >>>> CGAL support. You can disable CGAL with >>> -DDOLFIN_ENABLE_CGAL:BOOL=OFF when >>> >>>> running cmake. >>> >>>> >>> >>>> Johannes >>> >>>> >>> >>>> On Oct 8, 2014 5:35 PM, "André Timótheo" <[email protected]> >>> wrote: >>> >>>>> >>> >>>>> I try the make install comand... >>> >>>>> >>> >>>>> c++: internal compiler error: Killed (program cc1plus) >>> >>>>> Please submit a full bug report, >>> >>>>> with preprocessed source if appropriate. >>> >>>>> See <file:///usr/share/doc/gcc-4.8/README.Bugs> for instructions. >>> >>>>> make[2]: *** >>> >>>>> >>> [dolfin/CMakeFiles/dolfin.dir/generation/CSGCGALMeshGenerator3D.cpp.o] Error >>> >>>>> 4 >>> >>>>> make[1]: *** [dolfin/CMakeFiles/dolfin.dir/all] Error 2 >>> >>>>> make: *** [all] Error 2 >>> >>>>> >>> >>>>> How can I solve it? >>> >>>>> >>> >>>>> Andre Timotheo >>> >>>>> >>> >>>>> ---------- Forwarded message ---------- >>> >>>>> From: André Timótheo <[email protected]> >>> >>>>> Date: 2014-10-08 10:19 GMT-03:00 >>> >>>>> Subject: Fwd: [FEniCS] dolfin Configuring incomplete, errors >>> occurred! >>> >>>>> To: [email protected] >>> >>>>> >>> >>>>> >>> >>>>> thank you very much! >>> >>>>> >>> >>>>> Andre Machado >>> >>>>> >>> >>>>> >>> >>>>> Subject: Re: [FEniCS] dolfin Configuring incomplete, errors >>> occurred! >>> >>>>> To: André Timótheo <[email protected]> >>> >>>>> Cc: FEniCS Project <[email protected]> >>> >>>>> >>> >>>>> >>> >>>>> >>> >>>>> On Tue, Oct 7, 2014 at 11:48 PM, André Timótheo < >>> [email protected]> >>> >>>>> wrote: >>> >>>>> > I am trying to install Dolfin from >>> >>>>> > https://github.com/FEniCS/dolfin >>> >>>>> > and there are some problems: >>> >>>>> > >>> >>>>> > -- Copying demo and test data to build directory. >>> >>>>> > -- ---------------------------------------------- >>> >>>>> > CMake Error at CMakeLists.txt:898 (message): >>> >>>>> > Copy demo data failed: >>> >>>>> > >>> >>>>> > Traceback (most recent call last): >>> >>>>> > >>> >>>>> > File >>> >>>>> > >>> >>>>> > >>> "/home/parallels/Downloads/dolfin-master/cmake/scripts/copy-test-demo-data", >>> >>>>> > line 70, in <module> >>> >>>>> > copy_data(sys.argv[-1]) >>> >>>>> > File >>> >>>>> > >>> >>>>> > >>> "/home/parallels/Downloads/dolfin-master/cmake/scripts/copy-test-demo-data", >>> >>>>> > line 47, in copy_data >>> >>>>> > raise RuntimeError("destination directory cannot be the >>> same as >>> >>>>> > "\ >>> >>>>> > >>> >>>>> > RuntimeError: destination directory cannot be the same as the >>> >>>>> > dolfin >>> >>>>> > source >>> >>>>> > directory >>> >>>>> > >>> >>>>> > -- Configuring incomplete, errors occurred! >>> >>>>> >>> >>>>> Create a build directory and run cmake in that directory. For >>> >>>>> instance, in the DOLFIN source directory, do: >>> >>>>> >>> >>>>> mkdir build >>> >>>>> cd build >>> >>>>> cmake .. >>> >>>>> >>> >>>>> Johannes >>> >>>>> >>> >>>>> >>> > >>> >> >> >
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