> Most NLE's eventually recode when exporting though...

Usually, but not always. Anyhow, I like using ffmpeg for many batch operations 
before starting an edit, so it's important to minimize generational loss from 
re-encoding.

> As the error says, you cannot use filters and stream copy together.
> So no you cannot do it.

Would it be possible to create a bitstream filter to do this?

> If your file is a .mov then Cinema tools is your friend.

Perhaps. But it obviously doesn't have the same scripting options, nor the wide 
format support of ffmpeg. I wonder if anyone else is interested in this feature.
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