I was kindly informed that 10.12 already supports searchfs (and FSCatalogSearch along with it) on APFS, and after doing some testing myself it turned out that it's all working as intended, and that I just did the testing wrong, on my misguided assumptions, along with using an outdated version of my app for testing.
So, nothing to see here, all is well - and thanks to the File System team for making the effort to support searchfs on APFS! Thomas
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