Thanks Martin. I will try that. What I entered in the application menu originally was: /sw/bin/xmms. Should I be saying "source /sw/bin/init.sh; <name of the executable program>" for every application in the menu?
Yes. You can only avoid this by giving a complete environment to the X11 executable. There are a couple of ways to do this (*), but the simplest method is indeed to do what you said.
(*) In the "inofficial FAQ" for X11.app, you find some of them, for example http://www.misplaced.net/fom/X11/36.html.
-- Martin
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