On Sunday, June 29, 2003, at 10:47 PM, Claire Horner-Devine wrote:
Thanks for the advice on installing other parts of the Developer Tools. I did that and fink seemed to be working. I have, unfortunately, run into another problem.
I ran fink install arb, and it seemed to be chugging through quite a lot. In the end, however, I got this error:
....
g++2 -DDARWIN -DNO_REGEXPR -no-cpp-precomp -DHAVE_BOOL -O -DNDEBUG -D_ARB_XML -c xml.cxx -I. -I/sw/src/arb-071101-9/INCLUDE -I/usr/X11R6/include -I/sw/include/
ld -r -o XML.a xml.o
g++2 -DDARWIN -DNO_REGEXPR -no-cpp-precomp -DHAVE_BOOL -L/sw/lib -force_flat_namespace -Wl,-stack_size -Wl,10000000 -Wl,-stack_addr -Wl,c0000000 -o bin/arb_ntree -LLIBLINK -L/sw/lib \
NTREE/NTREE.a STAT/STAT.a PROBE_DESIGN/PROBE_DESIGN.a MULTI_PROBE/MULTI_PROBE.a CAT/CAT.a \
AWTC/AWTC.a AWTI/AWTI.a ARB_GDE/ARB_GDE.a MERGE/MERGE.a SERVERCNTRL/SERVERCNTRL.a GENOM/GENOM.a \
PRIMER_DESIGN/PRIMER_DESIGN.a XML/XML.a \
PROBE_COM/client.a -lAWT -lAW -lARBDB -L/usr/X11R6/lib -lstdc++ -lXm -lXt -lX11 -lXext -lXp -lc
/usr/bin/ld: multiple definitions of symbol __XEditResCheckMessages
/sw/lib/libXm.dylib(EditresCom.lo) definition of __XEditResCheckMessages
/usr/X11R6/lib/libXmu.6.dylib(EditresCom.o) definition of __XEditResCheckMessages
make: *** [bin/arb_ntree] Error 1
### execution of /var/tmp/tmp.0.vyV0ub failed, exit code 2
Failed: compiling arb-071101-9 failed
Suggestions? The output was extremely long so I am only posting the last bit - if more would help, please let me know and I can forward it to you.
Thanks!
Claire
--
**********************************
Claire Horner-Devine
Department of Biological Sciences 371 Serra Mall Stanford University Stanford, CA 94305-5020
(650) 724-3298 (650) 723-0589 Fax
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