Dear all,
I am new to fink and once it tried to update pdb2pqr I got an error which I
couldn't fix. I looked in the available resources but could not find
information about the subjet. The error message I get once I type fink
install pdb2pqr is listed bellow.
I was wondering if anyone could help me!
Much thanks in advance,
Robert Floor
The error message:
The following package will be installed or updated:
pdb2pqr
Setting runtime build-lock...
dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-pdb2pqr-1.3.0-1
/sw/src/fink.build
dpkg-deb: bouwen van pakket `fink-buildlock-pdb2pqr-1.3.0-1' in
`/sw/src/fink.build/fink-buildlock-pdb2pqr-1.3.0-1_2008.11.29-12.11.23_darwin-i386.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i
/sw/src/fink.build/fink-buildlock-pdb2pqr-1.3.0-1_2008.11.29-12.11.23_darwin-i386.deb
Selecteren van voorheen niet geselecteerd pakket
fink-buildlock-pdb2pqr-1.3.0-1.
(Database inlezen ... 91783 bestanden en mappen geïnstalleerd.)
Uitpakken van fink-buildlock-pdb2pqr-1.3.0-1 (uit
.../fink-buildlock-pdb2pqr-1.3.0-1_2008.11.29-12.11.23_darwin-i386.deb) ...
Instellen van fink-buildlock-pdb2pqr-1.3.0-1 (2008.11.29-12.11.23) ...
gzip -dc /sw/src/pdb2pqr-1.3.0.tar.gz | /sw/bin/tar -xf - --no-same-owner
--no-same-permissions
/var/tmp/tmp.1.50a2CZ
#!/bin/zsh -efv
./configure --with-max-atoms="1000000" --without-url
--with-python=/sw/bin/python --with-f77=fort77
checking build system type... i386-apple-darwin9.5.0
checking host system type... i386-apple-darwin9.5.0
checking target system type... i386-apple-darwin9.5.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for g++... g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... gcc3
checking for python include directory... -I/sw/include/python2.6
checking for --disable-propka... no
------------- Begin Processing PropKa Configure Options -----------
checking build system type... i386-apple-darwin9.5.0
checking host system type... i386-apple-darwin9.5.0
checking target system type... i386-apple-darwin9.5.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for python... /sw/bin/python
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g77... no
checking for f77... no
checking for xlf... no
checking for frt... no
checking for pgf77... no
checking for fl32... no
checking for af77... no
checking for fort77... fort77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether fort77 accepts -g... yes
checking how to run the C preprocessor... gcc -E
checking for python include directory... -I/sw/include/python2.6
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
------------- End Processing PropKa Configure Options -----------
checking for--disable-pdb2pka... no
------------- Begin Processing pdb2pka Configure Options -----------
checking whether you defined Numeric or Numpy... no
checking for Numeric include files... no
checking whether you defined numpy... no
checking for numpy includes files... configure: error: Unable to find
Numeric or Numpy! Please install Numeric or Numpy or specify the location
with ./configure NUMPY=path_to_numpy or NUMERIC=path_to_numeric or disable
PDB2PKA during configuration with --disable-pdb2pka
### execution of /var/tmp/tmp.1.50a2CZ failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-pdb2pqr-1.3.0-1
(Database inlezen ... 91784 bestanden en mappen geïnstalleerd.)
Verwijderen van fink-buildlock-pdb2pqr-1.3.0-1 ...
Failed: phase compiling: pdb2pqr-1.3.0-1 failed
Before reporting any errors, please run "fink selfupdate" and
try again. If you continue to have issues, please check to see if the
FAQ on fink's website solves the problem. If not, ask on the fink-users
or fink-beginners mailing lists, with a carbon copy to the maintainer:
W. G. Scott <[EMAIL PROTECTED]>
Note that this is preferable to emailing the maintainer directly, since
most fink package maintainers do not have access to all possible
hardware and software configurations.
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