Dear Alexander, thanks for looking into it. I ended up doing a full reinstall, working (so far)!
-- Prof. Hartmut Luecke Director, Center for Biomembrane Systems Depts. of Biochemistry, Biophysics & Computer Science 3205 McGaugh Hall University of California Irvine, CA 92697-3900 +1 (949) 394-7574 (mobile) +1 (949) 824-8551 (fax, email much preferred) hu...@uci.edu http://bass.bio.uci.edu/~hudel/ I apologize for the unauthorized disclaimer that may appear below - it is appended against my explicit wishes by UCI HS email services. On May 7, 2013, at 13:29, "Alexander Hansen" <alexanderk.han...@gmail.com> wrote: > On 5/7/13 12:23 PM, Luecke, Hartmut wrote: >> I am getting the error below, I did try "fink selfupdate", to no avail. >> >> fink update-all >> >> >> <stuff deleted> >> >> gfortran-fsf-4.8 -fimplicit-none -O3 -funroll-loops -L/sw64/lib >> -Wl,-dead_strip_dylibs -dynamiclib -o ../libqrupdate.dylib -install_name >> /sw64/lib/qrupdate-atlas/libqrupdate.1.dylib caxcpy.o cch1dn.o cch1up.o >> cchdex.o cchinx.o cchshx.o cgqvec.o cqhqr.o cqr1up.o cqrdec.o cqrder.o >> cqrinc.o cqrinr.o cqrot.o cqrqh.o cqrshc.o cqrtv1.o dch1dn.o dch1up.o >> dchdex.o dchinx.o dchshx.o dgqvec.o dqhqr.o dqr1up.o dqrdec.o dqrder.o >> dqrinc.o dqrinr.o dqrot.o dqrqh.o dqrshc.o dqrtv1.o sch1dn.o sch1up.o >> schdex.o schinx.o schshx.o sgqvec.o sqhqr.o sqr1up.o sqrdec.o sqrder.o >> sqrinc.o sqrinr.o sqrot.o sqrqh.o sqrshc.o sqrtv1.o zaxcpy.o zch1dn.o >> zch1up.o zchdex.o zchinx.o zchshx.o zgqvec.o zqhqr.o zqr1up.o zqrdec.o >> zqrder.o zqrinc.o zqrinr.o zqrot.o zqrqh.o zqrshc.o zqrtv1.o clu1up.o >> dlu1up.o slu1up.o zlu1up.o clup1up.o dlup1up.o slup1up.o zlup1up.o \ >> -ltatlas -ltatlas >> ld: library not found for -ltatlas >> collect2: error: ld returned 1 exit status >> make[1]: *** [../libqrupdate.dylib] Error 1 >> make: *** [solib] Error 2 >> ### execution of make failed, exit code 2 >> ### execution of /tmp/fink.wo_IH failed, exit code 2 >> Removing runtime build-lock... >> Removing build-lock package... >> /sw64/bin/dpkg-lockwait -r fink-buildlock-qrupdate-atlas-1.1.2-7 >> (Reading database ... 150234 files and directories currently installed.) >> Removing fink-buildlock-qrupdate-atlas-1.1.2-7 ... >> Failed: phase compiling: qrupdate-atlas-1.1.2-7 failed >> >> Before reporting any errors, please run "fink selfupdate" and try again. >> >> If you continue to have issues, please check to see if the FAQ on Fink's >> website solves the problem. If not, ask on one (not both, please) of >> these mailing lists: >> >> The Fink Users List <fink-us...@lists.sourceforge.net> >> The Fink Beginners List <fink-beginners@lists.sourceforge.net>, >> >> with a carbon copy to the maintainer: >> >> Alexander Hansen <alexkhan...@users.sourceforge.net> >> >> Note that this is preferable to emailing just the maintainer directly, >> since most fink package maintainers do not have access to all possible >> hardware and software configurations. >> >> Please try to include the complete error message in your report. This >> generally consists of a compiler line starting with e.g. "gcc" or "g++" >> followed by the actual error output from the compiler. >> >> Also include the following system information: >> Package manager version: 0.34.7 >> Distribution version: selfupdate-cvs Tue May 7 12:16:55 2013, 10.6, x86_64 >> Trees: local/main stable/main stable/crypto unstable/main unstable/crypto >> Xcode.app: 3.2.6 >> Xcode command-line tools: 3.2.6 >> Max. Fink build jobs: 1 >> >> >> >> -- >> Prof. Hartmut Luecke >> Director, Center for Biomembrane Systems >> Depts. of Biochemistry, Biophysics & Computer Science >> 3205 McGaugh Hall >> University of California >> Irvine, CA 92697-3900 >> +1 (949) 394-7574 (mobile) >> +1 (949) 824-8551 (fax, email much preferred) >> hu...@uci.edu http://bass.bio.uci.edu/~hudel/ >> >> I apologize for the unauthorized disclaimer that may appear below - it is >> appended against my explicit wishes by UCI HS email services. >> >> >> >> ________________________________ >> >> This message contains confidential information and is intended only for the >> individual named. If you are not the named addressee you should not >> disseminate, distribute or copy this e-mail. Please notify the sender >> immediately by e-mail if you have received this e-mail by mistake and delete >> this e-mail from your system. E-mail transmission cannot be guaranteed to be >> secure or error-free as information could be intercepted, corrupted, lost, >> destroyed, arrive late or incomplete, or contain viruses. The sender >> therefore does not accept liability for any errors or omissions in the >> contents of this message, which arise as a result of e-mail transmission. > > Weird. I'm not able to reproduce this--I'm on 10.8, but the relevant package > descriptions are identical. > > The libtatlas.dylib that it's looking for should be provided by > atlas-shlibs-3.10.1, which is an explicitly declared dependency. What do you > get from > > dpkg -L atlas-shlibs > > ? > -- > Alexander Hansen, Ph.D. > Fink User Liaison > My package updates: http://finkakh.wordpress.com/ ________________________________ This message contains confidential information and is intended only for the individual named. If you are not the named addressee you should not disseminate, distribute or copy this e-mail. Please notify the sender immediately by e-mail if you have received this e-mail by mistake and delete this e-mail from your system. E-mail transmission cannot be guaranteed to be secure or error-free as information could be intercepted, corrupted, lost, destroyed, arrive late or incomplete, or contain viruses. The sender therefore does not accept liability for any errors or omissions in the contents of this message, which arise as a result of e-mail transmission. ------------------------------------------------------------------------------ Learn Graph Databases - Download FREE O'Reilly Book "Graph Databases" is the definitive new guide to graph databases and their applications. This 200-page book is written by three acclaimed leaders in the field. The early access version is available now. Download your free book today! http://p.sf.net/sfu/neotech_d2d_may _______________________________________________ Fink-beginners mailing list Fink-beginners@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.apple.fink.beginners Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-beginners
