Dear Fink users,
It’s been now several days that I’m trying to update all my packages with FINK
after a "sudo fink selfupdate" command as usual.
The fink update-all command generates, as you can see in the screen copy below
the update of root4 & root5 from CERN software. Anyway, this update crashes
always at the same time of the compiling/installing procedure on the apparent
diagnostic that "openssl/ssl.h" is not found whereas it exists properly in the
/sw/include/openssl directory.
If anyone has an idea of how to improve this situation…
Have a nice day,
Jean-Éric
sapmcb46:~ ducret$ fink update-all
Scanning package description files..........
Information about 10364 packages read in 4 seconds.
The following 6 packages will be installed or updated:
libopus0-dev libopus0-shlibs root5 root5-shlibs xrootd4 xrootd4-dev
/sw/bin/apt-get-lockwait -q --ignore-breakage --download-only install
libopus0-dev=1.1.3-1 libopus0-shlibs=1.1.3-1
Reading Package Lists...
Building Dependency Tree...
2 packages upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 486kB of archives. After unpacking 20.5kB will be used.
Get:1 http://bindist.finkmirrors.net stable/main libopus0-shlibs 1.1.3-1 [229kB]
Get:2 http://bindist.finkmirrors.net stable/main libopus0-dev 1.1.3-1 [257kB]
Fetched 486kB in 1s (430kB/s)
Download complete and in download only mode
Reading buildlock packages...
/sw/bin/dpkg-lockwait -i
/sw/var/cache/apt/archives/libopus0-dev_1.1.3-1_darwin-x86%5f64.deb
/sw/var/cache/apt/archives/libopus0-shlibs_1.1.3-1_darwin-x86%5f64.deb
(Reading database ... 176737 files and directories currently installed.)
Preparing to replace libopus0-dev 1.1.2-1 (using
.../libopus0-dev_1.1.3-1_darwin-x86%5f64.deb) ...
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
Unpacking replacement libopus0-dev ...
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
Preparing to replace libopus0-shlibs 1.1.2-1 (using
.../libopus0-shlibs_1.1.3-1_darwin-x86%5f64.deb) ...
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
Unpacking replacement libopus0-shlibs ...
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
Setting up libopus0-shlibs (1.1.3-1) ...
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
Setting up libopus0-dev (1.1.3-1) ...
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
Clearing dependency_libs of .la files being installed
Setting runtime build-lock...
dpkg-deb -b /sw/src/fink.build/root-fink-buildlock-xrootd4-4.5.0-1
/sw/src/fink.build
dpkg-deb : construction du paquet « fink-buildlock-xrootd4-4.5.0-1 » dans «
/sw/src/fink.build/fink-buildlock-xrootd4-4.5.0-1_2017.01.16-08.35.33_darwin-x86_64.deb
».
Installing build-lock package...
/sw/bin/dpkg-lockwait -i
/sw/src/fink.build/fink-buildlock-xrootd4-4.5.0-1_2017.01.16-08.35.33_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-xrootd4-4.5.0-1.
(Reading database ... 176737 files and directories currently installed.)
Unpacking fink-buildlock-xrootd4-4.5.0-1 (from
.../fink-buildlock-xrootd4-4.5.0-1_2017.01.16-08.35.33_darwin-x86_64.deb) ...
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
Setting up fink-buildlock-xrootd4-4.5.0-1 (2017.01.16-08.35.33) ...
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
sudo -u fink-bld [ENV] sh -c /tmp/fink.qQi8E
env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xf
/sw/src/xrootd-4.5.0.tar.gz
sudo -u fink-bld [ENV] sh -c /tmp/fink.y6Uz2
[ -r /sw/fink/dists/stable/main/finkinfo/sci/xrootd4.patch ]
sudo -u fink-bld [ENV] sh -c /tmp/fink.i9SR8
sed 's|@PREFIX@|/sw|g' < /sw/fink/dists/stable/main/finkinfo/sci/xrootd4.patch
| patch -p1
patching file bindings/python/CMakeLists.txt
patching file cmake/XRootDOSDefs.cmake
patching file src/XrdPlugins.cmake
sudo -u fink-bld [ENV] sh -c /tmp/fink.cVcfA
/tmp/fink.hRIUO
#!/bin/sh -ev
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX=/sw \
-DPERL_EXECUTABLE=/usr/bin/perl
-DPERL_INCLUDE_PATH=/System/Library/Perl/5.12/darwin-thread-multi-2level/CORE \
-DPERL_LIBRARY=/System/Library/Perl/5.12/darwin-thread-multi-2level/CORE/libperl.dylib
\
..
-- The C compiler identification is AppleClang 7.0.2.7000181
-- The CXX compiler identification is AppleClang 7.0.2.7000181
-- Check for working C compiler: /sw/var/lib/fink/path-prefix-clang/cc
-- Check for working C compiler: /sw/var/lib/fink/path-prefix-clang/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-clang/c++
-- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-clang/c++ --
works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for setresuid
-- Looking for setresuid - not found
-- Looking for strlcpy
-- Looking for strlcpy - found
-- Looking for fstatat
-- Looking for fstatat - found
-- Looking for sigwaitinfo
-- Looking for sigwaitinfo - not found
-- Looking for sigwaitinfo in rt
-- Looking for sigwaitinfo in rt - not found
-- Looking for shadow.h
-- Looking for shadow.h - not found
-- Looking for getifaddrs
-- Looking for getifaddrs - found
-- Looking for getnameinfo
-- Looking for getnameinfo - found
-- Looking for getprotobyname_r
-- Looking for getprotobyname_r - not found
-- Looking for getprotobyname_r in socket
-- Looking for getprotobyname_r in socket - not found
-- Looking for gethostbyaddr_r
-- Looking for gethostbyaddr_r - not found
-- Looking for gethostbyaddr_r in socket
-- Looking for gethostbyaddr_r in socket - not found
-- Looking for crypt
-- Looking for crypt - found
-- Looking for et/com_err.h
-- Looking for et/com_err.h - not found
-- Performing Test HAVE_ATOMICS
-- Performing Test HAVE_ATOMICS - Success
-- Found ZLIB: /usr/lib/libz.dylib (found version "1.2.5")
-- Performing Test READLINE_OK
-- Performing Test READLINE_OK - Success
-- Found READLINE: /usr/lib/libreadline.dylib
-- Found LibXml2: /sw/lib/libxml2.dylib (found version "2.9.4")
-- Found OpenSSL: /usr/lib/libssl.dylib;/usr/lib/libcrypto.dylib
-- Looking for TLSv1_2_method
-- Looking for TLSv1_2_method - not found
-- Looking for TLSv1_1_method
-- Looking for TLSv1_1_method - not found
-- Looking for TLSv1_method
-- Looking for TLSv1_method - found
-- Found KERBEROS5: /usr/lib/libkrb5.dylib;/usr/lib/libcom_err.dylib
-- Could NOT find ceph (missing: RADOS_INCLUDE_DIR RADOS_LIBS)
-- Found PythonLibs: /usr/lib/libpython2.7.dylib (found suitable version
"2.7.10", minimum required is "2.4")
-- Found PythonInterp: /usr/local/bin/python2 (found suitable version "2.7.3",
minimum required is "2.4")
[I] No git repository info found. Trying to interpret VERSION_INFO
-- ----------------------------------------
-- Installation path: /sw
-- C Compiler: /sw/var/lib/fink/path-prefix-clang/cc
-- C++ Compiler: /sw/var/lib/fink/path-prefix-clang/c++
-- Build type: RelWithDebInfo
-- Plug-in version: 4
--
-- Readline support: yes
-- Fuse support: disabled
-- Crypto support: yes
-- Kerberos5 support: yes
-- XrdCl: yes
-- Tests: disabled
-- HTTP support: yes
-- CEPH support: disabled
-- Python support: yes
-- ----------------------------------------
-- Configuring done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
XrdAppUtils
XrdCl
XrdClient
XrdCrypto
XrdCryptoLite
XrdFfs
XrdPosix
XrdPosixPreload
XrdServer
XrdThrottle-4
XrdUtils
XrdXml
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
PERL_EXECUTABLE
PERL_INCLUDE_PATH
PERL_LIBRARY
-- Build files have been written to:
/sw/src/fink.build/xrootd4-4.5.0-1/xrootd-4.5.0/build
make
Scanning dependencies of target XrdVersion.hh
[I] No git repository info found. Trying to interpret VERSION_INFO
[I] src/XrdVersion.hh successfully generated
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src/CMakeFiles/XrdServer.dir/XrdXrootd/XrdXrootdXeq.cc.o
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src/CMakeFiles/XrdServer.dir/XrdXrootd/XrdXrootdXeqAio.cc.o
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src/CMakeFiles/XrdServer.dir/XrdOfs/XrdOfsTPCProg.cc.o
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src/CMakeFiles/XrdServer.dir/XrdCms/XrdCmsBlackList.cc.o
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Scanning dependencies of target XrdHttp-4
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src/CMakeFiles/XrdHttp-4.dir/XrdHttp/XrdHttpProtocol.cc.o
In file included from
/sw/src/fink.build/xrootd4-4.5.0-1/xrootd-4.5.0/src/XrdHttp/XrdHttpProtocol.cc:36:
/sw/src/fink.build/xrootd4-4.5.0-1/xrootd-4.5.0/src/XrdHttp/XrdHttpProtocol.hh:51:10:
fatal error: 'openssl/ssl.h' file not
found
#include <openssl/ssl.h>
^
1 error generated.
make[2]: *** [src/CMakeFiles/XrdHttp-4.dir/build.make:63:
src/CMakeFiles/XrdHttp-4.dir/XrdHttp/XrdHttpProtocol.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:229: src/CMakeFiles/XrdHttp-4.dir/all] Error
2
make: *** [Makefile:128: all] Error 2
### execution of /tmp/fink.hRIUO failed, exit code 2
### execution of /tmp/fink.cVcfA failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-xrootd4-4.5.0-1
(Reading database ... 176738 files and directories currently installed.)
Removing fink-buildlock-xrootd4-4.5.0-1 ...
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
/sw/share/dbus/launchd/org.finkproject.dbus-session.plist: Path had bad
ownership/permissions
Failed: phase compiling: xrootd4-4.5.0-1 failed
Before reporting any errors, please run "fink selfupdate" and try again.
If you continue to have issues, please check to see if the FAQ on Fink's
website solves the problem. If not, ask on one (not both, please) of
these mailing lists:
The Fink Users List <fink-us...@lists.sourceforge.net>
The Fink Beginners List <fink-beginners@lists.sourceforge.net>,
with a carbon copy to the maintainer:
Remi Mommsen <remigius.momm...@cern.ch>
Note that this is preferable to emailing just the maintainer directly,
since most fink package maintainers do not have access to all possible
hardware and software configurations.
Please try to include the complete error message in your report. This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.
Also include the following system information:
Package manager version: 0.41.1
Distribution version: selfupdate-rsync Mon Jan 16 08:34:16 2017, 10.10, x86_64
Trees: local/main stable/main
Xcode.app: 7.2
Xcode command-line tools: 7.2.0.0.1.1447826929
Max. Fink build jobs: 1
Jean-Eric Ducret
jean-eric.duc...@u-bordeaux.fr
Centre Lasers Intenses & Applications CELIA UMR 5107
Université de Bordeaux
351, cours de la Libération
F-33405 Talence, FRANCE
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