Update of /cvsroot/fink/experimental/thesin/finkinfo/sci
In directory sc8-pr-cvs1:/tmp/cvs-serv21524
Added Files:
openbabel-1.100.0-3.info openbabel-1.100.0-3.patch
xdrawchem-1.6.3-1.info xdrawchem-1.6.3-1.patch
Removed Files:
openbabel-1.100.0-2.info openbabel-1.100.0-2.patch
xdrawchem-1.6.2-1.info xdrawchem-1.6.2-1.patch
Log Message:
Fixed som headers in openbabel and new upstream release of xdrawchem
--- NEW FILE: openbabel-1.100.0-3.info ---
Package: openbabel
Version: 1.100.0
Revision: 3
###
Depends: %N-shlibs (= %v-%r)
BuildDepends: doxygen
BuildDependsOnly: true
Provides: babel
Conflicts: babel
Replaces: babel
###
Source: mirror:sourceforge:%n/%n-%v.tar.gz
Source-MD5: 6001013ebb0c4eca28e56a5d777bea39
###
Patch: %f.patch
###
GCC: 3.1
###
ConfigureParams: --enable-doxygen --mandir=%i/share/man --infodir=%p/share/info
--libexecdir=%p/lib
###
DocFiles: COPYING ChangeLog
###
SplitOff: <<
Package: %N-shlibs
Files: lib/lib%N.*.dylib
Shlibs: %p/lib/lib%N.1.dylib 1.0.0 %n (>= 1.100.0-2)
DocFiles: AUTHORS COPYING ChangeLog Doxyfile INSTALL README THANKS
<<
SplitOff2: <<
Package: %N-bin
Files: <<
bin/
share/man/
share/openbabel/
<<
DocFiles: COPYING ChangeLog
<<
###
Description: Project designed to pick up where Babel left off
DescDetail: <<
Open Babel is a project designed to pick up where Babel left off, as a
cross-platform program and library designed to interconvert between many
file formats used in molecular modeling and computational chemistry.
<<
###
License: GPL
Maintainer: Justin F. Hallett <[EMAIL PROTECTED]>
Homepage: http://openbabel.sourceforge.net/
--- NEW FILE: openbabel-1.100.0-3.patch ---
diff -ruN openbabel-1.100.0.orig/Makefile.in openbabel-1.100.0/Makefile.in
--- openbabel-1.100.0.orig/Makefile.in 2002-12-02 17:38:50.000000000 -0700
+++ openbabel-1.100.0/Makefile.in 2003-01-08 16:23:57.000000000 -0700
@@ -9,6 +9,8 @@
exec_prefix = @exec_prefix@
mandir = @mandir@/man1
bindir = @bindir@
+libdir = @libdir@
+includedir = @includedir@
DESTDIR =
diff -ruN openbabel-1.100.0.orig/src/Makefile.in openbabel-1.100.0/src/Makefile.in
--- openbabel-1.100.0.orig/src/Makefile.in 2002-12-02 17:21:26.000000000 -0700
+++ openbabel-1.100.0/src/Makefile.in 2003-01-08 16:36:02.000000000 -0700
@@ -4,6 +4,8 @@
exec_prefix = @exec_prefix@
pkgdatadir = @datadir@/openbabel
bindir = @bindir@
+libdir = @libdir@
+includedir = @includedir@
DESTDIR =
@@ -43,7 +45,7 @@
HDRS = aromatic.h atomtyp.h base.h binary.h \
bitgrid.h bitvec.h chiral.h chains.h cwrap.h \
data.h element.h extable.h fileformat.h grid.h \
- matrix.h mol.h molchrg.h molvector.h oeifstream.h \
+ matrix.h mol.h molchrg.h molvector.h \
obutil.h parsmart.h patty.h phmodel.h phmodeldata.h \
resdata.h ring.h rotor.h smi.h typer.h types.h version.h \
chains.h generic.h oberror.h
@@ -66,20 +68,24 @@
PROGRAM = babel
-LIBRARY = libopenbabel.a
+LIBRARY = libopenbabel
EXTRA_DIST = bin2hex.pl
MAKEFILE = Makefile
-$(PROGRAM): $(MAIN) $(LIBRARY)
- $(LINKER) $(LDFLAGS) -o $(PROGRAM) $(MAIN) $(LIBRARY) $(LIBS)
+$(PROGRAM): $(MAIN) $(LIBRARY).a
+ $(LINKER) $(LDFLAGS) -o $(PROGRAM) $(MAIN) $(LIBRARY).a $(LIBS)
-$(LIBRARY): $(DATAINCS) $(OBJS) $(EXTRAOBJS)
- $(AR) -r $(LIBRARY) $(OBJS) $(EXTRAOBJS)
- $(RANLIB) $(LIBRARY)
+$(LIBRARY).a: $(DATAINCS) $(OBJS) $(EXTRAOBJS)
+ $(LINKER) -dynamiclib -install_name $(libdir)/$(LIBRARY).1.dylib
+-compatibility_version 1.0.0 -current_version 1.100.0 -o $(LIBRARY).1.100.0.dylib
+$(OBJS) $(EXTRAOBJS)
+ rm -f $(LIBRARY).1.dylib $(LIBRARY).dylib
+ ln -s $(LIBRARY).1.100.0.dylib $(LIBRARY).1.dylib
+ ln -s $(LIBRARY).1.100.0.dylib $(LIBRARY).dylib
+ $(AR) -r $(LIBRARY).a $(OBJS) $(EXTRAOBJS)
+ $(RANLIB) $(LIBRARY).a
-all: $(DATAINCS) $(LIBRARY) $(PROGRAM)
+all: $(DATAINCS) $(LIBRARY).a $(PROGRAM)
test: check
check: $(PROGRAM)
@@ -91,7 +97,19 @@
install: $(PROGRAM)
$(MKDIRS) $(DESTDIR)$(bindir)
- $(INSTALL) $(PROGRAM) $(DESTDIR)$(bindir)
+ $(INSTALL) -m755 $(PROGRAM) $(DESTDIR)$(bindir)
+ $(MKDIRS) $(DESTDIR)$(libdir)
+ $(INSTALL) -m644 $(LIBRARY).a $(DESTDIR)$(libdir)
+ $(INSTALL) -m644 $(LIBRARY).1.100.0.dylib $(DESTDIR)$(libdir)
+ ln -s $(LIBRARY).1.100.0.dylib \
+ $(DESTDIR)$(libdir)/$(LIBRARY).1.dylib
+ ln -s $(LIBRARY).1.100.0.dylib \
+ $(DESTDIR)$(libdir)/$(LIBRARY).dylib
+ $(MKDIRS) $(DESTDIR)$(includedir)/openbabel
+ $(INSTALL) -m644 $(HDRS) $(DESTDIR)$(includedir)/openbabel
+ $(MKDIRS) $(DESTDIR)$(includedir)/openbabel/math
+ $(INSTALL) -m644 math/matrix3x3.h
+$(DESTDIR)$(includedir)/openbabel/math
+ $(INSTALL) -m644 math/vector3.h $(DESTDIR)$(includedir)/openbabel/math
$(MKDIRS) $(DESTDIR)$(pkgdatadir)
(cd $(srcdir); $(INSTALL) -m644 $(DATAFILES) $(DESTDIR)$(pkgdatadir))
@@ -129,4 +147,4 @@
.SUFFIXES: .cpp
.cpp.o:
- $(CXX) $(CXXFLAGS) $(DEFS) $(INCS) -c $< -o $@
+ $(CXX) -fno-common $(CXXFLAGS) $(DEFS) $(INCS) -c $< -o $@
--- NEW FILE: xdrawchem-1.6.3-1.info ---
Package: xdrawchem
Version: 1.6.3
Revision: 1
###
Depends: x11, dlcompat-shlibs, qt3-shlibs, openbabel-bin, openbabel-shlibs
BuildDepends: dlcompat-dev, qt3 (<< 3.1-1) | qt3-dev (>= 3.1-1), openbabel (>=
1.100.0-3)
###
Source: http://www.prism.gatech.edu/~gte067k/xdrawchem/%n-%v.tgz
Source-MD5: 983f7f7c60a4b156673400b1877f25ce
###
Patch: %f.patch
#PatchScript: find . -name *.moc.cpp | xargs rm
###
GCC: 3.1
###
ConfigureParams: --with-qt-thread --without-openbabel --with-pic --enable-share
--enable-static --mandir=%i/share/man --infodir=%p/share/info --libexecdir=%p/lib
###
DocFiles: *.txt
###
Description: Chemical drawing program
DescDetail: <<
XDrawChem is a program for drawing chemical structures. Features include
fixed length and fixed angle drawing, a ring tool to automatically draw
rings, and automatic alignment of structures in reactions. It can access
structures in the NCI database by name, CAS number, or formula. It can
predict 13C NMR and simple IR spectra. MDL Molfile, CML (Chemical
Markup Language), and ChemDraw binary and text file formats are supported.
<<
###
License: BSD
Maintainer: Justin F. Hallett <[EMAIL PROTECTED]>
Homepage: http://www.prism.gatech.edu/~gte067k/xdrawchem/
--- NEW FILE: xdrawchem-1.6.3-1.patch ---
diff -ruN xdrawchem-1.6.3.orig/xdrawchem/Makefile.in
xdrawchem-1.6.3/xdrawchem/Makefile.in
--- xdrawchem-1.6.3.orig/xdrawchem/Makefile.in 2003-01-06 14:35:02.000000000 -0700
+++ xdrawchem-1.6.3/xdrawchem/Makefile.in 2003-01-08 16:32:39.000000000 -0700
@@ -85,10 +85,10 @@
bin_PROGRAMS = xdrawchem
xdrawchem_SOURCES = application.cpp application_ring.cpp arrow.cpp bond.cpp
bondedit.cpp bracket.cpp cdx2cdxml.cpp cdxml_reader.cpp chemdata.cpp chemdata_cdx.cpp
chemdata_cdxml.cpp chemdata_cml.cpp chemdata_edit.cpp chemdata_mdl.cpp chemdata_rw.cpp
chemdata_rxn.cpp chemdata_tools.cpp chemdata_xdc.cpp chemdata_xml.cpp
crings_dialog.cpp curvearrow.cpp drawable.cpp fixeddialog.cpp graphdialog.cpp
graphwidget.cpp helpwindow.cpp main.cpp molecule.cpp molecule_1h_nmr.cpp
molecule_smiles.cpp molecule_tools.cpp molinfodialog.cpp myfiledialog.cpp namer.cpp
netaccess.cpp netchoosedialog.cpp netdialog.cpp pagesetupdialog.cpp peptidebuilder.cpp
previewwidget.cpp render2d.cpp render2d_draw.cpp render2d_event.cpp render2d_print.cpp
render2d_select.cpp render2d_text.cpp ringdialog.cpp sdg.cpp smilesdialog.cpp
symbol.cpp text.cpp xdc_toolbutton.cpp xml_cml.cpp xml_reader.cpp ioiface.cpp
application_ob.cpp chemdata_event.cpp
-xdrawchem_LDADD = -L$(QTDIR)/lib -L/usr/X11R6/lib/qt -L/usr/lib/qt -l$(qtlibname)
-L../openbabel -lopenbabel
+xdrawchem_LDADD = -L$(QTDIR)/lib -L/usr/X11R6/lib -l$(qtlibname) -lopenbabel
EXTRA_DIST = . aa_xpm.h application.h arrow.h arrows.h atom.h bond.h bondedit.h
boshcp.h bracket.h brackets.h ccw180.xpm ccw270.xpm ccw90.xpm cdxml_reader.h
chemdata.h clipboard.h cml.h crings_dialog.h curvearrow.h cw180.xpm cw270.xpm cw90.xpm
defs.h dpoint.h drawable.h fixeddialog.h graphdata.h graphdialog.h graphwidget.h
http.h lines.h moldata.h molecule.h molecule_sssr.h molinfodialog.h myfiledialog.h
na_xpm.h namer.h netaccess.h netchoosedialog.h netdialog.h pagesetupdialog.h
paintable.h peptidebuilder.h prefs.h previewwidget.h render2d.h ring.h ring_xpm.h
ringdialog.h rotatecursor.xpm sdg.h setofrings.h skullcursor.xpm smilesdialog.h
sugar_xpm.h symbol.h symbol_xpm.h text.h xdc_toolbutton.h xml_cml.h xml_reader.h
xdrawchem_METASOURCES = application.moc.cpp arrow.moc.cpp bondedit.moc.cpp
bond.moc.cpp bracket.moc.cpp chemdata.moc.cpp crings_dialog.moc.cpp curvearrow.moc.cpp
drawable.moc.cpp fixeddialog.moc.cpp graphdialog.moc.cpp graphwidget.moc.cpp
helpwindow.moc.cpp http.moc.cpp molecule.moc.cpp molinfodialog.moc.cpp
myfiledialog.moc.cpp netaccess.moc.cpp netchoosedialog.moc.cpp netdialog.moc.cpp
pagesetupdialog.moc.cpp peptidebuilder.moc.cpp previewwidget.moc.cpp render2d.moc.cpp
ringdialog.moc.cpp smilesdialog.moc.cpp symbol.moc.cpp text.moc.cpp
xdc_toolbutton.moc.cpp
-CPPFLAGS = -I/usr/X11R6/include -I$(QTDIR)/include -I/usr/include/qt
-I/usr/X11R6/include/qt -I../openbabel -DUNIX -DRINGHOME="\"$(pkgdatadir)/\""
-DXDC_SERVER=\"herger.ibb.gatech.edu\"
+CPPFLAGS = -I/usr/X11R6/include -I$(prefix)/include/openbabel -I$(QTDIR)/include
+-I$(QTDIR)/include/qt -DUNIX -DRINGHOME="\"$(pkgdatadir)/\""
+-DXDC_SERVER=\"herger.ibb.gatech.edu\"
CXXFLAGS = -g
MOC = moc
subdir = xdrawchem
diff -ruN xdrawchem-1.6.3.orig/xdrawchem/application_ob.cpp
xdrawchem-1.6.3/xdrawchem/application_ob.cpp
--- xdrawchem-1.6.3.orig/xdrawchem/application_ob.cpp 2003-01-04 12:36:41.000000000
-0700
+++ xdrawchem-1.6.3/xdrawchem/application_ob.cpp 2003-01-08 15:13:49.000000000
+-0700
@@ -9,7 +9,9 @@
#include <iostream>
#include <fstream>
#include <string.h>
-#include <malloc.h>
+#ifndef __APPLE__ && __GNUC__
+# include <malloc.h>
+#endif
using std::cout;
using std::endl;
--- openbabel-1.100.0-2.info DELETED ---
--- openbabel-1.100.0-2.patch DELETED ---
--- xdrawchem-1.6.2-1.info DELETED ---
--- xdrawchem-1.6.2-1.patch DELETED ---
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