sci nco-4.2.3.info, NONE, 1.1 nco-4.1.0.info, 1.4, 1.5 nco-4.2.0.info, 1.3, 1.4 nco-4.2.1.info, 1.2, 1.3 nco-4.2.2.info, 1.1, 1.2 nco.info, 1.16, 1.17

Alexander Hansen Wed, 23 Jan 2013 13:52:49 -0800

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory 
sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv11272/10.7/stable/main/finkinfo/sci


Modified Files:
        nco-4.1.0.info nco-4.2.0.info nco-4.2.1.info nco-4.2.2.info 
        nco.info 
Added Files:
        nco-4.2.3.info 
Log Message:
New upstream NCO, maggots.


Index: nco-4.2.0.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/nco-4.2.0.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- nco-4.2.0.info      28 Nov 2012 17:29:24 -0000      1.3
+++ nco-4.2.0.info      23 Jan 2013 21:52:36 -0000      1.4
@@ -1,7 +1,7 @@
 Info2:<<
 Package: nco
 Version: 4.2.0
-Revision: 4
+Revision: 5
 Type: v (4.2.0)
 Description: The NetCDF Operators, using netcdf-4
 License: GPL3
@@ -15,7 +15,7 @@
 BuildDepends: <<
        antlr, gsl, udunits2-dev (>= 2.1.22-1), 
        fink (>=0.28-1), fink-package-precedence,
-       netcdf-c7, netcdf-bin (>=4.2)
+       netcdf-c7 (>= 4.2.1.1-2), netcdf-bin (>=4.2)
 <<
 Conflicts: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap 
 Replaces: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap
@@ -90,7 +90,7 @@
 Homepage: http://nco.sourceforge.net/
 Splitoff: <<
        Package: %N%type_pkg[v]-shlibs
-       Depends: netcdf-c7-shlibs, udunits2-shlibs
+       Depends: netcdf-c7-shlibs (>= 4.2.1.1-2), udunits2-shlibs
        DocFiles: doc/LICENSE
        Files: lib/libnco*%v.dylib
        Shlibs: <<
@@ -105,7 +105,7 @@
        Files: include lib
        Description:  The NetCDF Operators, build-time files
        BuildDependsOnly: true
-       Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N410-dev, %N421-dev, %N422-dev, %N423-dev
-    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N410-dev, %N421-dev, %N422-dev, %N423-dev
+       Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N410-dev, %N421-dev, %N422-dev, %N423-dev, %N424-dev
+    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N410-dev, %N421-dev, %N422-dev, %N423-dev, %N424-dev
 <<
 <<

--- NEW FILE: nco-4.2.3.info ---
Info2:<<
Package: nco
Version: 4.2.3
Revision: 2
Type: v (4.2.3)
Description: The NetCDF Operators, using netcdf-4
License: GPL3
Maintainer: Alexander Hansen <[email protected]>

# Prerequisites
Depends: <<
        gsl-shlibs,
        %N%type_pkg[v]-shlibs (=%v-%r)
<<
BuildDepends: <<
        antlr, gsl, udunits2-dev (>= 2.1.22-1), 
        fink (>=0.28-1), fink-package-precedence,
        netcdf-c7 (>= 4.2.1.1-2), netcdf-bin (>=4.2)
<<
Conflicts: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap 
Replaces: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap
# Unpack Phase:
Source: http://%N.sourceforge.net/src/%N-%v.tar.gz
Source-MD5: 4b1e476ea56df2048edf9f35b4d62111

# Patch Phase:
PatchScript:  <<
#!/bin/sh -ev
        perl -pi -e 's|<malloc.h>|<stdlib.h>|' src/nco++/Invoke.cc \
        src/nco++/NcapVector.hh src/nco++/ncoGrammer.g src/nco++/ncoLexer.hpp \
        src/nco++/ncoParser.hpp src/nco++/ncoTree.hpp
        perl -pi -e 's|-lnco|%b/src/nco/.libs/libnco.dylib|' 
src/nco++/Makefile.in
        perl -pi -e 's,dynamiclib,$& -single_module,' configure aclocal.m4
        perl -pi -e "s,(apple.*)enable_shared='no',\1," configure
<<

# Compile Phase:
GCC: 4.0
SetLDFLAGS: -Wl,-dead_strip_dylibs

ConfigureParams: <<
        --enable-udunits2 --disable-udunits --enable-gsl \
        --enable-dap-netcdf \
        --enable-netcdf4 \
        --enable-dependency-tracking \
        --enable-shared \
        --disable-static 
<<
CompileScript: << 
        #!/bin/sh -ev
        export UDUNITS2_PATH=%p
        export  NETCDF_INC=%p \
                        NETCDF_LIB=%p \
                        NETCDF4_ROOT=%p
               NETCDF4_ROOT=%pp \ing \its --enable-gsl 
\igureocal.m4ile.inendapp, %N410-dev, %N421-dev, %N422-dev, 
%N423-dev, 
%N424-devG%fÿuºß¢+Úß¢+Õµß¢+È±à¢+àG%fÿàÓà¢+Ð<%fÿ
 ;%fÿkÐß¢+6 
èè!è!pG%fÿàG%fÿx±à¢+Ð=%fÿ²ß¢+Ðß¢+pG%fÿ`²ß¢+¯G%fÿÀá¢+uºß¢+pá¢+Øtá¢+¨yá¢+Úß¢+x±à¢+Ð=%fÿ
 
<%fÿkÐß¢+à!à!pG%fÿàG%fÿHNà¢+°>%fÿ²ß¢+Ðß¢+pG%fÿ`²ß¢+¯G%fÿ
 
G%fÿG%fÿ8Ûµß¢+pàG%fÿuºß¢+Úß¢+°>%fÿ=%fÿkÐß¢+GHIJKMNOPpG%fÿàG%fÿHhà¢+P@%fÿ²ß¢+Ðß¢+pG%fÿ0á¢+uºß¢+±à¢+
 
9Eà¢+pá¢+Øtá¢+¨yá¢+Úß¢+Hhà¢+P@%fÿ>%fÿkÐß¢+8hà¢+P@%fÿÀ>%fÿkÐß¢+(hà¢+P@%fÿð>%fÿkÐß¢+hà¢+P@%fÿ
 ?%fÿkÐß¢+    ¨~á¢+uºß¢+¨yá¢+ 
9%fÿEà¢+e¹ß¢+Øtá¢+À?%fÿyEà¢+e¹ß¢+pá¢+ð?%fÿZEà¢+e¹ß¢+Ø4Eà¢+±à¢+
 
9Eà¢+pá¢+Ø±à¢+Øtá¢+¨yá¢+Úß¢+8Ûµß¢+ýà¢+àG%fÿpËDà¢+
 
A%fÿp@%fÿkÐß¢+5678:<=>?@BDpG%fÿàG%fÿ
 à¢+àG%fÿuºß¢+Õµß¢+ 
@%fÿýà¢+e¹ß¢+Õµß¢+Õ_@fÆS 
Qöl±íìÝß¢+àG%fÿ 
à¢+°B%fÿA%fÿkÐß¢+u]ÞÓ     4Q 
÷U^QÊ§¶uª¹ñìò*ÄvpG%fÿàG%fÿHNÚß¢+ÀD%fÿ²ß¢+Ðß¢+pG%fÿ`²ß¢+¯G%fÿ
 G%fÿG%fÿ±à¢+uºß¢+Ø±à¢+ 
±à¢+Úß¢+ÀD%fÿpB%fÿkÐß¢+8NÚß¢+ÀD%fÿ
 B%fÿkÐ%{default_script}
        fink-package-precedence --prohibit-bdep=%N-dap,%N-opendap,%N-netcdf,%N .
<<

# Install Phase:
DocFiles: doc/*
InfoDocs: %N.info

InstallScript: <<
        make install DESTDIR=%d
<<
DescDetail: <<
        Each NCO operator (e.g., ncks) takes netCDF or HDF input file(s),
        performs an operation (e.g., averaging, hyperslabbing, or renaming),
        and outputs a processed netCDF file. Although most users of
        netCDF and HDF data are involved in scientific research,
        these data formats, and thus NCO, are generic and
        are equally useful in fields like finance.
        
        This version is OPeNDAP/DODS enabled, so it can be given
        URLs to read remote datasets as if they were local netCDF files.

        It uses Fink's netcdf-c7 package (upstream netCDF4.2).
<<
DescPackaging: <<
Upstream has discontinued using libnc-dap, so have "nco" built against
netcdf be the new hotness, and merge nco-netcdf into it on update.

Use versioned dependency on netcdf-c7 to 
<<
DescPort: <<
Get rid of hardcoded malloc.h for C++ stuff.
Patch out an -lnco that tends to link to a library in a 
previously installed version of the package.
Upstream claims OS X doesn't understand shared libs; perhaps it's
upstream who doesn't understand. :-)
<<
Homepage: http://nco.sourceforge.net/
Splitoff: <<
        Package: %N%type_pkg[v]-shlibs
        Depends: netcdf-c7-shlibs (>= 4.2.1.1-2), udunits2-shlibs
        DocFiles: doc/LICENSE
        Files: lib/libnco*%v.dylib
        Shlibs: <<
                %p/lib/libnco-%type_raw[v].dylib 0.0.0 %n (>=4.2.3-1)
                %p/lib/libnco_c++-%type_raw[v].dylib 0.0.0 %n (>=4.2.3-1)
        <<
        Description: The NetCDF Operators, shared libraries
<<
Splitoff2: <<
        Package: %N%type_pkg[v]-dev
        DocFiles: doc/LICENSE
        Files: include lib
        Description:  The NetCDF Operators, build-time files
        BuildDependsOnly: true
        Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N410-dev, %N420-dev, %N421-dev, %N422-dev, %N424-dev, 
%N424-dev
    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N410-dev, %N420-dev, %N421-dev, %N422-dev, %N424-dev, %N424-dev
<<
<<

Index: nco-4.1.0.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/nco-4.1.0.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- nco-4.1.0.info      28 Nov 2012 17:29:23 -0000      1.4
+++ nco-4.1.0.info      23 Jan 2013 21:52:36 -0000      1.5
@@ -1,7 +1,7 @@
 Info2:<<
 Package: nco
 Version: 4.1.0
-Revision: 5
+Revision: 6
 Type: v (4.1.0)
 Description: The NetCDF Operators, using netcdf-4
 License: GPL3
@@ -15,7 +15,7 @@
 BuildDepends: <<
        antlr, gsl, udunits2-dev (>= 2.1.22-1), 
        fink (>=0.28-1), fink-package-precedence,
-       netcdf-c7, netcdf-bin (>=4.2)
+       netcdf-c7 (>= 4.2.1.1-2), netcdf-bin (>=4.2)
 <<
 Conflicts: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap 
 Replaces: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap
@@ -90,7 +90,7 @@
 Homepage: http://nco.sourceforge.net/
 Splitoff: <<
        Package: %N%type_pkg[v]-shlibs
-       Depends: netcdf-c7-shlibs, udunits2-shlibs
+       Depends: netcdf-c7-shlibs (>= 4.2.1.1-2), udunits2-shlibs
        DocFiles: doc/LICENSE
        Files: lib/libnco*%v.dylib
        Shlibs: <<
@@ -105,7 +105,7 @@
        Files: include lib
        Description:  The NetCDF Operators, build-time files
        BuildDependsOnly: true
-       Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N420-dev, %N421-dev, %N422-dev, %N423-dev
-    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N420-dev, %N421-dev, %N422-dev, %N423-dev
+       Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N420-dev, %N421-dev, %N422-dev, %N423-dev, %N424-dev
+    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N420-dev, %N421-dev, %N422-dev, %N423-dev, %N424-dev
 <<
 <<

Index: nco-4.2.1.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/nco-4.2.1.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- nco-4.2.1.info      28 Nov 2012 17:29:27 -0000      1.2
+++ nco-4.2.1.info      23 Jan 2013 21:52:36 -0000      1.3
@@ -1,7 +1,7 @@
 Info2:<<
 Package: nco
 Version: 4.2.1
-Revision: 3
+Revision: 4
 Type: v (4.2.1)
 Description: The NetCDF Operators, using netcdf-4
 License: GPL3
@@ -15,7 +15,7 @@
 BuildDepends: <<
        antlr, gsl, udunits2-dev (>= 2.1.22-1), 
        fink (>=0.28-1), fink-package-precedence,
-       netcdf-c7, netcdf-bin (>=4.2)
+       netcdf-c7 (>= 4.2.1.1-2), netcdf-bin (>=4.2)
 <<
 Conflicts: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap 
 Replaces: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap
@@ -90,7 +90,7 @@
 Homepage: http://nco.sourceforge.net/
 Splitoff: <<
        Package: %N%type_pkg[v]-shlibs
-       Depends: netcdf-c7-shlibs, udunits2-shlibs
+       Depends: netcdf-c7-shlibs (>= 4.2.1.1-2), udunits2-shlibs
        DocFiles: doc/LICENSE
        Files: lib/libnco*%v.dylib
        Shlibs: <<
@@ -105,7 +105,7 @@
        Files: include lib
        Description:  The NetCDF Operators, build-time files
        BuildDependsOnly: true
-       Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N410-dev, %N420-dev, %N422-dev, %N423-dev
-    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N410-dev, %N420-dev, %N422-dev, %N423-dev
+       Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N410-dev, %N420-dev, %N422-dev, %N423-dev, %N424-dev
+    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N410-dev, %N420-dev, %N422-dev, %N423-dev, %N424-dev
 <<
 <<

Index: nco.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/nco.info,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- nco.info    28 Nov 2012 17:29:33 -0000      1.16
+++ nco.info    23 Jan 2013 21:52:36 -0000      1.17
@@ -1,8 +1,8 @@
 Info2:<<
 Package: nco
-Version: 4.2.3
+Version: 4.2.4
 Revision: 1
-Type: v (4.2.3)
+Type: v (4.2.4)
 Description: The NetCDF Operators, using netcdf-4
 License: GPL3
 Maintainer: Alexander Hansen <[email protected]>
@@ -15,13 +15,13 @@
 BuildDepends: <<
        antlr, gsl, udunits2-dev (>= 2.1.22-1), 
        fink (>=0.28-1), fink-package-precedence,
-       netcdf-c7, netcdf-bin (>=4.2)
+       netcdf-c7 (>= 4.2.1.1-2), netcdf-bin (>=4.2)
 <<
 Conflicts: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap 
 Replaces: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap
 # Unpack Phase:
 Source: http://%N.sourceforge.net/src/%N-%v.tar.gz
-Source-MD5: 4b1e476ea56df2048edf9f35b4d62111
+Source-MD5: 3d4b023b8c6299d5f825acbbb69bc659
 
 # Patch Phase:
 PatchScript:  <<
@@ -90,7 +90,7 @@
 Homepage: http://nco.sourceforge.net/
 Splitoff: <<
        Package: %N%type_pkg[v]-shlibs
-       Depends: netcdf-c7-shlibs, udunits2-shlibs
+       Depends: netcdf-c7-shlibs (>= 4.2.1.1-2), udunits2-shlibs
        DocFiles: doc/LICENSE
        Files: lib/libnco*%v.dylib
        Shlibs: <<
@@ -105,7 +105,7 @@
        Files: include lib
        Description:  The NetCDF Operators, build-time files
        BuildDependsOnly: true
-       Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N410-dev, %N420-dev, %N421-dev, %N422-dev
-    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N410-dev, %N420-dev, %N421-dev, %N422-dev
+       Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N410-dev, %N420-dev, %N421-dev, %N422-dev, %N423-dev
+    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N410-dev, %N420-dev, %N421-dev, %N422-dev, %N423-dev
 <<
 <<

Index: nco-4.2.2.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/nco-4.2.2.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- nco-4.2.2.info      28 Nov 2012 17:29:29 -0000      1.1
+++ nco-4.2.2.info      23 Jan 2013 21:52:36 -0000      1.2
@@ -1,7 +1,7 @@
 Info2:<<
 Package: nco
 Version: 4.2.2
-Revision: 2
+Revision: 3
 Type: v (4.2.2)
 Description: The NetCDF Operators, using netcdf-4
 License: GPL3
@@ -15,7 +15,7 @@
 BuildDepends: <<
        antlr, gsl, udunits2-dev (>= 2.1.22-1), 
        fink (>=0.28-1), fink-package-precedence,
-       netcdf-c7, netcdf-bin (>=4.2)
+       netcdf-c7 (>= 4.2.1.1-2), netcdf-bin (>=4.2)
 <<
 Conflicts: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap 
 Replaces: %N (<< 4.0.8-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap
@@ -90,7 +90,7 @@
 Homepage: http://nco.sourceforge.net/
 Splitoff: <<
        Package: %N%type_pkg[v]-shlibs
-       Depends: netcdf-c7-shlibs, udunits2-shlibs
+       Depends: netcdf-c7-shlibs (>= 4.2.1.1-2), udunits2-shlibs
        DocFiles: doc/LICENSE
        Files: lib/libnco*%v.dylib
        Shlibs: <<
@@ -105,7 +105,7 @@
        Files: include lib
        Description:  The NetCDF Operators, build-time files
        BuildDependsOnly: true
-       Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N410-dev, %N420-dev, %N421-dev, %N423-dev
-    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N410-dev, %N420-dev, %N421-dev, %N423-dev
+       Conflicts: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 
4.0.9-1), %N-opendap, %N410-dev, %N420-dev, %N421-dev, %N423-dev, %N424-dev
+    Replaces: %N (<= 4.0.9-1), %N-dap (<< 4.0.8-1), %N-netcdf (<< 4.0.9-1), 
%N-opendap, %N410-dev, %N420-dev, %N421-dev, %N423-dev, %N424-dev
 <<
 <<

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[cvs] dists/10.7/stable/main/finkinfo/sci nco-4.2.3.info, NONE, 1.1 nco-4.1.0.info, 1.4, 1.5 nco-4.2.0.info, 1.3, 1.4 nco-4.2.1.info, 1.2, 1.3 nco-4.2.2.info, 1.1, 1.2 nco.info, 1.16, 1.17

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