Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/10.4-EOL/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv17494
Added Files:
r-base30.info r-base30.patch
Log Message:
sync. w/ 10.!4/stable, validated on powerpc-darwin8
--- NEW FILE: r-base30.info ---
Info2: <<
Package: r-base30
Version: 3.0.1
Revision: 2
Description: R Framework
Maintainer: BABA Yoshihiko <babayoshih...@mac.com>
Depends: %N-shlibs (=%v-%r)
BuildDepends: bzip2-dev, cairo, glib2-dev, gcc48-compiler, libgettext8-dev,
libiconv-dev, libncurses5, libjpeg9, libpng15, pango1-xft2-ft219-dev, pcre,
pkgconfig, readline6, tcltk-dev, x11-dev, fink (>= 0.28.1),
fink-package-precedence, flag-sort (>= 0.5), glitz
Source: http://cran.r-project.org/src/base/R-3/R-%v.tar.gz
Source-MD5: 36d51544b007fff26c7fbf36b02ea5ad
PatchFile: %n.patch
PatchFile-MD5: 1307e3f8ea068e3a30bce0511369a511
# PatchScript: sed 's|@PREFIX@|%p|g' < %{PatchFile} | patch -p1
SourceDirectory: R-%v
SetCC: flag-sort -r gcc
SetCXX: flag-sort -r g++
ConfigureParams: <<
--libdir='%p/lib' --mandir='${prefix}/share/man' \
--with-blas="-framework Accelerate" \
--with-lapack="-framework Accelerate" \
--with-aqua --enable-R-framework=%p/Library/Frameworks \
--with-system-bzlib --with-system-pcre --with-system-zlib \
--with-x --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib \
--with-tcl-config=%p/lib/tclConfig.sh --with-tk-config=%p/lib/tkConfig.sh
<<
CompileScript: <<
#!/bin/sh -efv
export F77=%p/bin/gfortran-fsf-4.8
export FC=%p/bin/gfortran-fsf-4.8
perl -pi -e "s|vecLib|Accelerate|g" src/modules/lapack/vecLibg95c.c
unset R_HOME
./configure %c CFLAGS="-g -O3" CXXFLAGS="-g -O3" FFLAGS="-g -O3"
make
fink-package-precedence --depfile-ext='\.d' --prohibit-bdep
r-base,r-base213,r-base214,r-base215,r-base30 .
<<
InfoTest: <<
TestScript: <<
#!/bin/sh -efv
# don't leak from already-installed package
unset R_HOME
make -j1 -k check
<<
<<
InstallScript: <<
#!/bin/sh -ex
FW_VER=`echo %v | sed -e's/[\.][0-9]$//'`
# prefix=%i/Library/Frameworks
make install DESTDIR=%d
cd %i
# Fix path
perl -pi -e 's|%i|%p|g' Library/Frameworks/R.framework/Resources/bin/R
perl -pi -e "s,Resources,Versions/$FW_VER/Resources,g"
Library/Frameworks/R.framework/Resources/bin/R
if [[ $( sw_vers -productVersion ) > 10.5 ]]; then
perl -pi -e 's|# export PATH|export PATH|'
Library/Frameworks/R.framework/Resources/bin/R
fi
# Fix install_name in libR.dylib
install_name_tool -id
"%p/Library/Frameworks/R.framework/Versions/$FW_VER/Resources/lib/libR.dylib"
Library/Frameworks/R.framework/Versions/$FW_VER/Resources/lib/libR.dylib
install_name_tool -id
"%p/Library/Frameworks/R.framework/Versions/$FW_VER/Resources/lib/libRlapack.dylib"
Library/Frameworks/R.framework/Versions/$FW_VER/Resources/lib/libRlapack.dylib
# Move site-library out of R
pushd Library/Frameworks/R.framework/Resources/
ln -s %p/lib/R/site-library site-library
popd
# Make more version specific symlink
pushd Library/Frameworks/R.framework/Versions/
ln -s $FW_VER %v
popd
# Fix install names in libs and modules
pushd Library/Frameworks/R.framework/Versions/$FW_VER/Resources/library/
LIBS="class cluster foreign graphics grDevices grid KernSmooth lattice MASS
Matrix methods mgcv nlme nnet parallel rpart spatial splines stats survival
tcltk tools utils "
for LIB in $LIBS;
do
install_name_tool -id
%p/Library/Frameworks/R.framework/Versions/$FW_VER/Resources/library/$LIB/libs/$LIB.dylib
$LIB/libs/$LIB.dylib
done
popd
pushd Library/Frameworks/R.framework/Versions/$FW_VER/Resources/modules
install_name_tool -id
%p/Library/Frameworks/R.framework/Versions/$FW_VER/Resources/modules/internet.dylib
internet.dylib
install_name_tool -id
%p/Library/Frameworks/R.framework/Versions/$FW_VER/Resources/modules/lapack.dylib
lapack.dylib
install_name_tool -id
%p/Library/Frameworks/R.framework/Versions/3.0/Resources/modules/R_de.dylib
R_de.dylib
install_name_tool -id
%p/Library/Frameworks/R.framework/Versions/$FW_VER/Resources/modules/R_X11.dylib
R_X11.dylib
install_name_tool -id
%p/Library/Frameworks/R.framework/Versions/$FW_VER/Resources/modules/vfonts.dylib
vfonts.dylib
popd
mkdir -p bin
pushd bin
ln -s %p/Library/Frameworks/R.framework/Versions/$FW_VER/Resources/bin/R R
popd
mkdir -p share/man/man1
pushd share/man/man1
ln -s %p/Library/Frameworks/R.framework/Versions/$FW_VER/Resources/man1/R.1
R.1
popd
# Keep the library folder safe. Users can install their libraries in
$HOME/Library/R.
chmod 755 Library/Frameworks/R.framework/Resources/library
# Satisfy validation
rm -rf
Library/Frameworks/R.framework/Versions/3.0/Resources/library/Matrix/include
# AKH: fix install_names
cd %i/Library/Frameworks/R.framework/Versions/3.0/Resources/library
install_name_tool -id \
%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/grDevices/libs/cairo.dylib
\
grDevices/libs/cairo.dylib
<<
RunTimeVars: <<
R_HOME: %p/Library/Frameworks/R.framework/Resources
<<
SplitOff: <<
Package: %N-shlibs
Description: R Libraries
Depends: bzip2-shlibs, cairo-shlibs, gcc48-shlibs, glib2-shlibs,
libgettext8-shlibs, libiconv, libjpeg9-shlibs, libpng15-shlibs, libtiff-shlibs,
pango1-xft2-ft219-shlibs, pcre-shlibs, readline6-shlibs, tcltk
Files: <<
Library/Frameworks/R.framework/Versions/3.0/Resources/lib
Library/Frameworks/R.framework/Versions/3.0/Resources/library
Library/Frameworks/R.framework/Versions/3.0/Resources/modules
<<
Shlibs: <<
%p/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libR.dylib 3.0.0
%n (>= 3.0.0-1)
%p/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libRlapack.dylib
3.0.0 %n (>= 3.0.0-1)
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/class/libs/class.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/cluster/libs/cluster.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/foreign/libs/foreign.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/grDevices/libs/cairo.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/graphics/libs/graphics.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/grDevices/libs/grDevices.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/grid/libs/grid.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/KernSmooth/libs/KernSmooth.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/lattice/libs/lattice.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/MASS/libs/MASS.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Matrix/libs/Matrix.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/methods/libs/methods.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/mgcv/libs/mgcv.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/nlme/libs/nlme.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/nnet/libs/nnet.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/parallel/libs/parallel.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/rpart/libs/rpart.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/spatial/libs/spatial.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/splines/libs/splines.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/stats/libs/stats.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/survival/libs/survival.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/tcltk/libs/tcltk.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/tools/libs/tools.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/library/utils/libs/utils.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/modules/internet.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/modules/lapack.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/modules/R_de.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/modules/R_X11.dylib
!%p/Library/Frameworks/R.framework/Versions/3.0/Resources/modules/vfonts.dylib
<<
<<
SplitOff2: <<
Package: %N-dev
Description: R Headers
Depends: %N-shlibs (=%v-%r)
Replaces: <<
r-base,
r-base213-dev,
r-base214-dev,
r-base215-dev,
r-base30-dev
<<
Conflicts: <<
r-base213-dev,
r-base214-dev,
r-base215-dev,
r-base30-dev
<<
BuildDependsOnly: True
Files: <<
Library/Frameworks/R.framework/Versions/3.0/Resources/include
Library/Frameworks/R.framework/Versions/3.0/Headers
lib/pkgconfig
<<
<<
SplitOff3: <<
Package: r-base
Description: Language and environment for statistical computing and graphics
Depends: %N (=%v-%r)
Files: <<
Library/Frameworks/R.framework/R
Library/Frameworks/R.framework/Headers
Library/Frameworks/R.framework/Libraries
Library/Frameworks/R.framework/PrivateHeaders
Library/Frameworks/R.framework/Resources
Library/Frameworks/R.framework/Versions/Current
bin
share
<<
<<
DescDetail: <<
R is similar to S, which was developed at Bell Laboratories by John
Chambers et al. It provides a wide variety of statistical and
graphical techniques (linear and nonlinear modelling, statistical
tests, time series analysis, classification, clustering, ...). R is
designed as a true computer language with control-flow constructions
for iteration and alternation, and it allows users to add additional
functionality by defining new functions. For computationally intensive
tasks, C and Fortran code can be linked and called at run time.
The "recommended" R packages are now included in the distribution, so
there is no longer a need for a r-recommended package. If you already
have installed an earlier version of r-recommended, remove it before
installing this package.
Builds R Framework, installs in %p/Library/Frameworks.
R.app no longer included in the R source distribution. To install, go
to http://cran.r-project.org/bin/macosx/, download and install R-GUI.dmg.
You will then need to edit Info.plist inside the app bundle to point
to %p/Library/R.Framework (instead of /Library/R.Framework).
<<
DescPackaging: 'pdflatex' is needed to make NEWS.pdf
License: GPL
Homepage: http://cran.R-project.org/
<<
--- NEW FILE: r-base30.patch ---
diff -uNr R-2.15.0/Makeconf.in R-2.15.0.fink/Makeconf.in
--- R-2.15.0/Makeconf.in 2012-03-01 18:02:30.000000000 -0500
+++ R-2.15.0.fink/Makeconf.in 2012-04-13 20:43:42.000000000 -0400
@@ -75,7 +75,7 @@
READLINE_LIBS = @READLINE_LIBS@
SED = @SED@
SHELL = @R_SHELL@
-SHLIB_EXT = @SHLIB_EXT@
+SHLIB_EXT = .dylib
SHLIB_CFLAGS = @SHLIB_CFLAGS@
SHLIB_FFLAGS = @SHLIB_FFLAGS@
SHLIB_LD = @SHLIB_LD@
diff -uNr R-2.15.0/Makefile.fw R-2.15.0.fink/Makefile.fw
--- R-2.15.0/Makefile.fw 2011-10-02 18:02:39.000000000 -0400
+++ R-2.15.0.fink/Makefile.fw 2012-04-13 20:43:42.000000000 -0400
@@ -8,7 +8,7 @@
install install-strip: install-R-framework
@(sed 's|^LIBR =.*|LIBR = -F$(R_FRAMEWORK_DIR)/.. -framework
R|' \
- $(top_builddir)/etc/Makeconf >
"$(rhome)/etc${R_ARCH}/Makeconf")
+ $(top_builddir)/etc/Makeconf >
"$(DESTDIR)$(R_FRAMEWORK_DIR)/Resources/etc${R_ARCH}/Makeconf")
@(sed 's/Versions\/$(FW_VERSION)\/Resources/Resources/' \
"$(DESTDIR)$(R_FRAMEWORK_DIR)/Resources/bin/R" > \
"$(DESTDIR)$(R_FRAMEWORK_DIR)/Resources/bin/RR")
@@ -37,7 +37,7 @@
ln -f -s -n Versions/Current/Resources Resources)
@## the resulting libR will point dyld to the fat libR regardless of
its origin
@(cd "$(DESTDIR)$(R_FRAMEWORK_DIR)/Resources/lib" && \
- install_name_tool -id
"$(R_FRAMEWORK_DIR)/Versions/$(FW_VERSION)/Resources/lib/libR.dylib"
$(Rexeclibdir)/libR.dylib)
+ install_name_tool -id
"$(R_FRAMEWORK_DIR)/Versions/$(FW_VERSION)/Resources/lib/libR.dylib"
$(DESTDIR)$(Rexeclibdir)/libR.dylib)
@( otool=otool ; if otool -D "$(DESTDIR)$(Rexeclibdir)/libR.dylib"|grep
'not an object'>/dev/null; then otool=otool64; fi; \
for lib in Rlapack Rblas R; do \
if test -e "$(DESTDIR)$(Rexeclibdir)/lib$${lib}.dylib"; then $(ECHO)
" lib$${lib}"; \
diff -uNr R-2.15.0/configure R-2.15.0.fink/configure
--- R-2.15.0/configure 2012-03-22 19:05:53.000000000 -0400
+++ R-2.15.0.fink/configure 2012-04-13 20:43:42.000000000 -0400
@@ -26017,7 +26017,7 @@
main_ld="${CC}"
shlib_ld="${CC}"
shlib_cxxld="${CXX}"
-SHLIB_EXT=".so"
+SHLIB_EXT=".dylib"
SHLIB_LIBADD=
use_exportfiles=no
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