Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv17344

Modified Files:
        clipper.info coot.info gpp4.info ssm.info 
Log Message:
update to coot and its dependencies to latest version and gcc4.8

Index: gpp4.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/gpp4.info,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -d -r1.8 -r1.9
--- gpp4.info   29 Jul 2012 15:27:53 -0000      1.8
+++ gpp4.info   5 Jul 2013 01:07:39 -0000       1.9
@@ -1,6 +1,6 @@
 Package: gpp4
 Version: 1.2.0
-Revision: 31
+Revision: 32
 Maintainer: W. G. Scott <wgsc...@users.sourceforge.net> 
 DescPackaging: <<
  Based on package created by Morten Kjeldgaard <m...@bioxray.dk> with minor
@@ -13,8 +13,8 @@
 Source: http://diablo.ucsc.edu/~wgscott/%n/%n-%v.tar.gz
 Source-MD5: bb443de0b3385847ea9987f1220e56f1
 NoSourceDirectory: false
-Depends: %N-shlibs (= %v-%r), gcc47-shlibs 
-BuildDepends: mmdb-dev (>= 1.23.2-30), ssm-dev (>= 0.1-30), gcc47, pkgconfig
+Depends: %N-shlibs (= %v-%r), gcc48-shlibs 
+BuildDepends: mmdb-dev (>= 1.25.0-32), ssm-dev (>= 0.1-32), gcc48, pkgconfig
 BuildConflicts: g77, fort77, g95
 BuildDependsOnly: true
 HomePage: http://www.bioxray.dk/~mok/gpp4
@@ -46,7 +46,7 @@
 <<
 CompileScript: <<
 #!/bin/bash -evf
-LDFLAGS="-L%p/lib/gcc4.7/lib -L%p/lib -L/usr/lib" \
+LDFLAGS="-L%p/lib/gcc4.8/lib -L%p/lib -L/usr/lib" \
 MMDB_CFLAGS="-I%p/include/mmdb" MMDB_LIBS="-L%p/lib"  \
 FC="gfortran" \
   ./configure --prefix=%p 
@@ -65,7 +65,7 @@
        %p/lib/libgpp4.0.dylib 1.0.0 %n (>= 1.2.0-1)
     %p/lib/libgpp4f.0.dylib 1.0.0 %n (>=1.2.0-1)
   <<
-       Depends: gcc47-shlibs 
+       Depends: gcc48-shlibs 
 <<
 SplitOff2: <<
 Package: %N-dev

Index: clipper.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/clipper.info,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -d -r1.10 -r1.11
--- clipper.info        29 Jul 2012 15:27:53 -0000      1.10
+++ clipper.info        5 Jul 2013 01:07:39 -0000       1.11
@@ -1,14 +1,14 @@
 Package: clipper
 Epoch: 1
 Version: 2.1
-Revision: 31
+Revision: 32
 GCC:4.0
 BuildDepends: <<
 fftw (>= 2.1.5-1010) | fftw-mpi (>= 2.1.5-1010), 
 mmdb-dev (>= 1.23.2-31), 
 ssm-dev (>= 0.1-31), 
 gpp4-dev (>= 1.2.0-31), 
-gcc47
+gcc48
 <<
 Depends: <<
 %n-shlibs (>= %e:%v-%r)
@@ -52,7 +52,7 @@
        mmdb-shlibs (>= 1.23.2-1),
        ssm-shlibs (>= 0.1-26), 
        gpp4-shlibs (>= 1.2.0-26),
-       gcc47-shlibs 
+       gcc48-shlibs 
   <<
   Files: <<
        lib/libclipper-ccp4.2.*dylib

Index: coot.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/coot.info,v
retrieving revision 1.39
retrieving revision 1.40
diff -u -d -r1.39 -r1.40
--- coot.info   11 Feb 2013 22:09:36 -0000      1.39
+++ coot.info   5 Jul 2013 01:07:39 -0000       1.40
@@ -1,17 +1,15 @@
 Package: coot
-Version: 0.7.1-pre
-Revision: 4562
-SourceDirectory: %n-%v
+Version: 0.7.1.0  
+Revision: 1
+SourceDirectory: %n-0.7.1
 Distribution: 10.6, 10.7, 10.8
 GCC: 4.0 
-Source: 
http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/coot/source/pre-releases/%n-%v-revision-%r.tar.gz
-Source-MD5: 82d653d6e97bb940b024833314a3ccfc
-Source2: 
http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/Dictionary/refmac_dictionary_v5.38.tar.gz
-Source2-MD5: 174a5fc5e5be03cb432c61e8da4283df
+Source: 
http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/coot/source/releases/%n-0.7.1.tar.gz
+Source-MD5: 94557d40bb2d1643b613c34fea10300b 
+Source2: 
http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/Dictionary/refmac_dictionary_v5.41.tar.gz
+Source2-MD5: 7dc4af3a32a3e030ae79e6f67aaf7e79
 Source3: 
http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz
 Source3-MD5: 257ab90d44f1c877ada96720dbb87c13 
-#Source4: 
http://coot.googlecode.com/svn-history/r4544/trunk/lidia-core/cod-types.hh
-#Source4-MD5: 333ee49b341b9ee534b3e6f72cff7064
 ###############################################################################
 Description: Crystallographic molecular graphics
 DescDetail: <<
@@ -40,9 +38,9 @@
 Recommends:  povray, ccp4, raster3d                        
 BuildDepends: <<
  fink (>= 0.24.12)               ,
- clipper-dev (>= 1:2.1-31)       ,
- gpp4-dev (>= 1.2.0-31)          ,
- mmdb-dev (>= 1.23.2-31)         ,
+ clipper-dev (>= 1:2.1-32)       ,
+ gpp4-dev (>= 1.2.0-32)          ,
+ mmdb-dev (>= 1.25.0-32)         ,
  ssm-dev (>= 0.1-31)             ,
  atk1 (>= 1.28.0-1)              ,
  cairo (>= 1.8.8-3)              ,
@@ -87,15 +85,15 @@
 <<
 #           
 Depends: <<
- clipper-shlibs (>= 1:2.1-31)     ,
- gpp4-shlibs (>= 1.2.0-31)        ,
- mmdb-shlibs (>= 1.23.2-31)       ,
- ssm-shlibs (>= 0.1-31)           ,
+ coot-shlibs (= 0.7.1.0-%r)       ,
+ clipper-shlibs (>= 1:2.1-32)     ,
+ gpp4-shlibs (>= 1.2.0-32)        ,
+ mmdb-shlibs (>= 1.25.0-32)       ,
+ ssm-shlibs (>= 0.1-32)           ,
  atk1-shlibs (>= 1.28.0-1)        ,
- coot-shlibs (= %v-%r)            ,
  fftw-shlibs | fftw-mpi-shlibs    ,
  freeglut-shlibs                  ,
- gcc47-shlibs (>= 4.7.1-1000)     ,
+ gcc48-shlibs (>= 4.7.1-1000)     ,
  giflib-shlibs                    ,
  glib2-shlibs (>= 2.22.0-1)       ,
  goocanvas-shlibs (>= 0.15-2)     ,
@@ -236,9 +234,11 @@
 # and a few others as follows:
 /bin/rm -f %i/bin/coot
 echo '#!/bin/sh -f ' >  %i/bin/coot
+echo "export LC_NUMERIC=C" >>  %i/bin/coot
 echo "export COOT_REFMAC_LIB_DIR=%p/share/coot/lib"  >>  %i/bin/coot
 echo "export COOT_PYTHON_DIR=%p/share/coot/python"   >>  %i/bin/coot
 echo 'export COOT_SBASE_DIR="$CCP4/share/sbase"'     >>  %i/bin/coot
+echo 'export CLIBD="$CCP4/lib/data"'     >>  %i/bin/coot
 echo "export 
PYTHONPATH=%p/lib/python2.7/site-packages:%p/lib/python2.7/site-packages/gtk-2.0:%p/share/coot/python"
  >>  %i/bin/coot
 echo "%p/bin/coot-real \"\$@\" "  >>  %i/bin/coot
 chmod a+x %i/bin/coot
@@ -261,37 +261,37 @@
 lib/libcootilus.0*.dylib
 <<
     Shlibs: <<
-        %p/lib/libccp4mg-surface.0.dylib            1.0.0 %n (>= 0.7-1)
-        %p/lib/libccp4mg-utils.0.dylib              1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-analysis.0.dylib             1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-AngleInfo.0.dylib            1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-cabuild.0.dylib              1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-compat.0.dylib               1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-coord-extras.0.dylib         1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-coord-utils.0.dylib          1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-coords.0.dylib               1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-db-main.0.dylib              1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-geometry.0.dylib             1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-goograph.0.dylib             1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-gtkgraph.0.dylib             1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-high-res.0.dylib             1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-ideal.0.dylib                1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-isosurface.0.dylib           1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-lidia-core.0.dylib           1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-lidia.0.dylib                1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-ligand.0.dylib               1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-map-heavy.0.dylib            1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-map-utils.0.dylib            1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-mini-mol.0.dylib             1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-protein-db.0.dylib           1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-shelx.0.dylib                1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-skeleton.0.dylib             1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-surface.0.dylib              1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-tw.0.dylib                   1.0.0 %n (>= 0.7-1)
-        %p/lib/libcoot-utils.0.dylib                1.0.0 %n (>= 0.7-1)
-        %p/lib/libcootaneer.0.dylib                 1.0.0 %n (>= 0.7-1)
-        %p/lib/libcootilus.0.dylib                  1.0.0 %n (>= 0.7-1)
-    <<
+        %p/lib/libccp4mg-surface.0.dylib            1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libccp4mg-utils.0.dylib              1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-analysis.0.dylib             1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-AngleInfo.0.dylib            1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-cabuild.0.dylib              1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-compat.0.dylib               1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-coord-extras.0.dylib         1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-coord-utils.0.dylib          1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-coords.0.dylib               1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-db-main.0.dylib              1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-geometry.0.dylib             1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-goograph.0.dylib             1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-gtkgraph.0.dylib             1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-high-res.0.dylib             1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-ideal.0.dylib                1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-isosurface.0.dylib           1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-lidia-core.0.dylib           1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-lidia.0.dylib                1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-ligand.0.dylib               1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-map-heavy.0.dylib            1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-map-utils.0.dylib            1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-mini-mol.0.dylib             1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-protein-db.0.dylib           1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-shelx.0.dylib                1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-skeleton.0.dylib             1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-surface.0.dylib              1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-tw.0.dylib                   1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcoot-utils.0.dylib                1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcootaneer.0.dylib                 1.0.0 %n (>= 0.7.1-1)
+        %p/lib/libcootilus.0.dylib                  1.0.0 %n (>= 0.7.1-1)
+    <<                                                               
 DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
 << 
 #
@@ -299,7 +299,7 @@
 #
 SplitOff2: <<
 Package: %N-dev
-Depends: %N (= %v-%r)
+Depends: %N (= 0.7.1.0-%r)
 BuildDependsOnly: True
 Files: <<   
 lib/*.a

Index: ssm.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/ssm.info,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- ssm.info    29 Jul 2012 15:27:53 -0000      1.7
+++ ssm.info    5 Jul 2013 01:07:39 -0000       1.8
@@ -1,6 +1,6 @@
 Package: ssm
 Version: 0.1
-Revision: 31
+Revision: 32
 Maintainer: W. G. Scott <wgsc...@users.sourceforge.net> 
 DescPackaging: <<
  Based on package created by Morten Kjeldgaard <m...@bioxray.dk> with minor
@@ -16,7 +16,7 @@
 Source-MD5: 317d9cc78a88fa5652a4a4b06f329823
 NoSourceDirectory: false
 Depends: %n-shlibs (= %v-%r)
-BuildDepends: mmdb-dev (>= 1.23.2-30) 
+BuildDepends: mmdb-dev (>= 1.25.0-32) 
 BuildDependsOnly: true
 DocFiles: README AUTHORS NEWS COPYING 
 DescDetail: << 


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