Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv17344
Modified Files: clipper.info coot.info gpp4.info ssm.info Log Message: update to coot and its dependencies to latest version and gcc4.8 Index: gpp4.info =================================================================== RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/gpp4.info,v retrieving revision 1.8 retrieving revision 1.9 diff -u -d -r1.8 -r1.9 --- gpp4.info 29 Jul 2012 15:27:53 -0000 1.8 +++ gpp4.info 5 Jul 2013 01:07:39 -0000 1.9 @@ -1,6 +1,6 @@ Package: gpp4 Version: 1.2.0 -Revision: 31 +Revision: 32 Maintainer: W. G. Scott <wgsc...@users.sourceforge.net> DescPackaging: << Based on package created by Morten Kjeldgaard <m...@bioxray.dk> with minor @@ -13,8 +13,8 @@ Source: http://diablo.ucsc.edu/~wgscott/%n/%n-%v.tar.gz Source-MD5: bb443de0b3385847ea9987f1220e56f1 NoSourceDirectory: false -Depends: %N-shlibs (= %v-%r), gcc47-shlibs -BuildDepends: mmdb-dev (>= 1.23.2-30), ssm-dev (>= 0.1-30), gcc47, pkgconfig +Depends: %N-shlibs (= %v-%r), gcc48-shlibs +BuildDepends: mmdb-dev (>= 1.25.0-32), ssm-dev (>= 0.1-32), gcc48, pkgconfig BuildConflicts: g77, fort77, g95 BuildDependsOnly: true HomePage: http://www.bioxray.dk/~mok/gpp4 @@ -46,7 +46,7 @@ << CompileScript: << #!/bin/bash -evf -LDFLAGS="-L%p/lib/gcc4.7/lib -L%p/lib -L/usr/lib" \ +LDFLAGS="-L%p/lib/gcc4.8/lib -L%p/lib -L/usr/lib" \ MMDB_CFLAGS="-I%p/include/mmdb" MMDB_LIBS="-L%p/lib" \ FC="gfortran" \ ./configure --prefix=%p @@ -65,7 +65,7 @@ %p/lib/libgpp4.0.dylib 1.0.0 %n (>= 1.2.0-1) %p/lib/libgpp4f.0.dylib 1.0.0 %n (>=1.2.0-1) << - Depends: gcc47-shlibs + Depends: gcc48-shlibs << SplitOff2: << Package: %N-dev Index: clipper.info =================================================================== RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/clipper.info,v retrieving revision 1.10 retrieving revision 1.11 diff -u -d -r1.10 -r1.11 --- clipper.info 29 Jul 2012 15:27:53 -0000 1.10 +++ clipper.info 5 Jul 2013 01:07:39 -0000 1.11 @@ -1,14 +1,14 @@ Package: clipper Epoch: 1 Version: 2.1 -Revision: 31 +Revision: 32 GCC:4.0 BuildDepends: << fftw (>= 2.1.5-1010) | fftw-mpi (>= 2.1.5-1010), mmdb-dev (>= 1.23.2-31), ssm-dev (>= 0.1-31), gpp4-dev (>= 1.2.0-31), -gcc47 +gcc48 << Depends: << %n-shlibs (>= %e:%v-%r) @@ -52,7 +52,7 @@ mmdb-shlibs (>= 1.23.2-1), ssm-shlibs (>= 0.1-26), gpp4-shlibs (>= 1.2.0-26), - gcc47-shlibs + gcc48-shlibs << Files: << lib/libclipper-ccp4.2.*dylib Index: coot.info =================================================================== RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/coot.info,v retrieving revision 1.39 retrieving revision 1.40 diff -u -d -r1.39 -r1.40 --- coot.info 11 Feb 2013 22:09:36 -0000 1.39 +++ coot.info 5 Jul 2013 01:07:39 -0000 1.40 @@ -1,17 +1,15 @@ Package: coot -Version: 0.7.1-pre -Revision: 4562 -SourceDirectory: %n-%v +Version: 0.7.1.0 +Revision: 1 +SourceDirectory: %n-0.7.1 Distribution: 10.6, 10.7, 10.8 GCC: 4.0 -Source: http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/coot/source/pre-releases/%n-%v-revision-%r.tar.gz -Source-MD5: 82d653d6e97bb940b024833314a3ccfc -Source2: http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/Dictionary/refmac_dictionary_v5.38.tar.gz -Source2-MD5: 174a5fc5e5be03cb432c61e8da4283df +Source: http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/coot/source/releases/%n-0.7.1.tar.gz +Source-MD5: 94557d40bb2d1643b613c34fea10300b +Source2: http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/Dictionary/refmac_dictionary_v5.41.tar.gz +Source2-MD5: 7dc4af3a32a3e030ae79e6f67aaf7e79 Source3: http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz Source3-MD5: 257ab90d44f1c877ada96720dbb87c13 -#Source4: http://coot.googlecode.com/svn-history/r4544/trunk/lidia-core/cod-types.hh -#Source4-MD5: 333ee49b341b9ee534b3e6f72cff7064 ############################################################################### Description: Crystallographic molecular graphics DescDetail: << @@ -40,9 +38,9 @@ Recommends: povray, ccp4, raster3d BuildDepends: << fink (>= 0.24.12) , - clipper-dev (>= 1:2.1-31) , - gpp4-dev (>= 1.2.0-31) , - mmdb-dev (>= 1.23.2-31) , + clipper-dev (>= 1:2.1-32) , + gpp4-dev (>= 1.2.0-32) , + mmdb-dev (>= 1.25.0-32) , ssm-dev (>= 0.1-31) , atk1 (>= 1.28.0-1) , cairo (>= 1.8.8-3) , @@ -87,15 +85,15 @@ << # Depends: << - clipper-shlibs (>= 1:2.1-31) , - gpp4-shlibs (>= 1.2.0-31) , - mmdb-shlibs (>= 1.23.2-31) , - ssm-shlibs (>= 0.1-31) , + coot-shlibs (= 0.7.1.0-%r) , + clipper-shlibs (>= 1:2.1-32) , + gpp4-shlibs (>= 1.2.0-32) , + mmdb-shlibs (>= 1.25.0-32) , + ssm-shlibs (>= 0.1-32) , atk1-shlibs (>= 1.28.0-1) , - coot-shlibs (= %v-%r) , fftw-shlibs | fftw-mpi-shlibs , freeglut-shlibs , - gcc47-shlibs (>= 4.7.1-1000) , + gcc48-shlibs (>= 4.7.1-1000) , giflib-shlibs , glib2-shlibs (>= 2.22.0-1) , goocanvas-shlibs (>= 0.15-2) , @@ -236,9 +234,11 @@ # and a few others as follows: /bin/rm -f %i/bin/coot echo '#!/bin/sh -f ' > %i/bin/coot +echo "export LC_NUMERIC=C" >> %i/bin/coot echo "export COOT_REFMAC_LIB_DIR=%p/share/coot/lib" >> %i/bin/coot echo "export COOT_PYTHON_DIR=%p/share/coot/python" >> %i/bin/coot echo 'export COOT_SBASE_DIR="$CCP4/share/sbase"' >> %i/bin/coot +echo 'export CLIBD="$CCP4/lib/data"' >> %i/bin/coot echo "export PYTHONPATH=%p/lib/python2.7/site-packages:%p/lib/python2.7/site-packages/gtk-2.0:%p/share/coot/python" >> %i/bin/coot echo "%p/bin/coot-real \"\$@\" " >> %i/bin/coot chmod a+x %i/bin/coot @@ -261,37 +261,37 @@ lib/libcootilus.0*.dylib << Shlibs: << - %p/lib/libccp4mg-surface.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libccp4mg-utils.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-analysis.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-AngleInfo.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-cabuild.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-compat.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-coord-extras.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-coord-utils.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-coords.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-db-main.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-geometry.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-goograph.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-gtkgraph.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-high-res.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-ideal.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-isosurface.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-lidia-core.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-lidia.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-ligand.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-map-heavy.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-map-utils.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-mini-mol.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-protein-db.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-shelx.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-skeleton.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-surface.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-tw.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcoot-utils.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcootaneer.0.dylib 1.0.0 %n (>= 0.7-1) - %p/lib/libcootilus.0.dylib 1.0.0 %n (>= 0.7-1) - << + %p/lib/libccp4mg-surface.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libccp4mg-utils.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-analysis.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-AngleInfo.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-cabuild.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-compat.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-coord-extras.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-coord-utils.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-coords.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-db-main.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-geometry.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-goograph.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-gtkgraph.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-high-res.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-ideal.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-isosurface.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-lidia-core.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-lidia.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-ligand.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-map-heavy.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-map-utils.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-mini-mol.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-protein-db.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-shelx.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-skeleton.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-surface.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-tw.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcoot-utils.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcootaneer.0.dylib 1.0.0 %n (>= 0.7.1-1) + %p/lib/libcootilus.0.dylib 1.0.0 %n (>= 0.7.1-1) + << DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO << # @@ -299,7 +299,7 @@ # SplitOff2: << Package: %N-dev -Depends: %N (= %v-%r) +Depends: %N (= 0.7.1.0-%r) BuildDependsOnly: True Files: << lib/*.a Index: ssm.info =================================================================== RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/ssm.info,v retrieving revision 1.7 retrieving revision 1.8 diff -u -d -r1.7 -r1.8 --- ssm.info 29 Jul 2012 15:27:53 -0000 1.7 +++ ssm.info 5 Jul 2013 01:07:39 -0000 1.8 @@ -1,6 +1,6 @@ Package: ssm Version: 0.1 -Revision: 31 +Revision: 32 Maintainer: W. G. Scott <wgsc...@users.sourceforge.net> DescPackaging: << Based on package created by Morten Kjeldgaard <m...@bioxray.dk> with minor @@ -16,7 +16,7 @@ Source-MD5: 317d9cc78a88fa5652a4a4b06f329823 NoSourceDirectory: false Depends: %n-shlibs (= %v-%r) -BuildDepends: mmdb-dev (>= 1.23.2-30) +BuildDepends: mmdb-dev (>= 1.25.0-32) BuildDependsOnly: true DocFiles: README AUTHORS NEWS COPYING DescDetail: << ------------------------------------------------------------------------------ This SF.net email is sponsored by Windows: Build for Windows Store. http://p.sf.net/sfu/windows-dev2dev _______________________________________________ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs