Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv1252
Added Files:
tcoffee-10.7.info tcoffee.patch
Log Message:
t-coffee to 10.7 with bump to latest version 9.03.r1318
--- NEW FILE: tcoffee-10.7.info ---
Package: tcoffee
Version: 9.03.r1318
Revision: 1
Distribution: 10.7
Source:
http://www.tcoffee.org/Packages/Stable/Latest/T-COFFEE_distribution_Version_%v.tar.gz
Source-MD5: 933829c93ec8a2cb30a4e486e9252d88
Sourcedirectory: T-COFFEE_distribution_Version_%v
Depends: <<
gcc48-shlibs,
soap-lite-ssl-pm5123 | soap-lite-pm5123
<<
BuildDepends: gcc48-compiler
PatchFile: %n.patch
PatchFile-MD5: d6f44c77758306d8faf1d0db7c55363d
PatchScript: <<
%{default_script}
perl -pi -e 's|gfortran|gfortran-fsf-4.8|g' install
perl -pi -e 's|=\"gcc\"|=\"gcc-fsf-4.8\"|g' install
perl -pi -e 's|/usr/local/bin|%p/bin|g ' install
<<
SetCC: gcc-fsf-4.8
CompileScript: <<
./install tcoffee -plugins=%p/bin
<<
InstallScript: <<
mkdir -p %i/bin
cp t_coffee_source/t_coffee %i/bin
mkdir -p %i/share/%n
cp -R example %i/share/%n
<<
DocFiles: license.txt
Description: T-Coffee Multiple Sequence Alignment Program
DescDetail: <<
T-Coffee computes multiple sequence alignments for protein or dna/rna
sequences. It is considerably slower than ClustalW but does a better
job aligning more distantly related sequences (<30% identity). There
are also some enhancements for cDNA alignments.
<<
DescPackaging: <<
Previous maintainer: Jason Stajich
Koen van der Drift <drift...@users.sourceforge.net>
<<
DescUsage: <<
Before running T-coffee, issue the following two commands:
cp -R %p/share/%n/t_coffee/ ~/.t_coffee
sudo chown -R <your_username> ~/.t_coffee/
T-coffee can be started by the command t_coffee.
<<
License: GPL
Maintainer: None <fink-de...@lists.sourceforge.net>
Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html
--- NEW FILE: tcoffee.patch ---
diff -Nurd T-COFFEE_distribution/install T-COFFEE_distribution-patched/install
--- T-COFFEE_distribution/install 2010-04-23 15:04:43.000000000 -0400
+++ T-COFFEE_distribution-patched/install 2010-04-24 13:29:53.000000000
-0400
@@ -574,6 +574,8 @@
sub sign_license_ni
{
+ return;
+
my $F=new FileHandle;
open ($F, "license.txt");
while (<$F>)
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