Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv13918
Added Files:
namot.info namot.patch
Log Message:
import from 10.6 with lib upgrades and build fixes
--- NEW FILE: namot.patch ---
diff -Nurd -x'*~' namot-2.2.0-pre4.orig/src/Makefile.am
namot-2.2.0-pre4/src/Makefile.am
--- namot-2.2.0-pre4.orig/src/Makefile.am 2002-12-31 03:14:49.000000000
-0500
+++ namot-2.2.0-pre4/src/Makefile.am 2013-07-10 13:07:00.000000000 -0400
@@ -44,6 +44,6 @@
scriptinter.h snapshot.h vectors.h singlestrand.h \
amberff.h mc.h read_amber7.h
_pynamot_la_CFLAGS = $(AM_CFLAGS) $(PYINCLUDE)
-_pynamot_la_LDFLAGS = -module
+_pynamot_la_LDFLAGS = -module -avoid-version
libexec_SCRIPTS = pynamot.py
endif
diff -Nurd -x'*~' namot-2.2.0-pre4.orig/src/graphics.c
namot-2.2.0-pre4/src/graphics.c
--- namot-2.2.0-pre4.orig/src/graphics.c 2002-10-12 20:18:15.000000000
-0400
+++ namot-2.2.0-pre4/src/graphics.c 2013-07-10 12:16:09.000000000 -0400
@@ -1331,7 +1331,7 @@
PackPNGRows(
) {
int ctr1=0,ctr2=0;
- char *srcptr=NULL;
+ unsigned char *srcptr=NULL;
png_byte **row_pointers;
long pos=0;
void *Imageptr;
diff -Nurd -x'*~' namot-2.2.0-pre4.orig/src/pngwriter.c
namot-2.2.0-pre4/src/pngwriter.c
--- namot-2.2.0-pre4.orig/src/pngwriter.c 2002-08-22 15:31:09.000000000
-0400
+++ namot-2.2.0-pre4/src/pngwriter.c 2013-07-10 12:48:19.000000000 -0400
@@ -1,3 +1,4 @@
+#include <string.h>
#include "general.h"
#include "x.h"
diff -Nurd -x'*~' namot-2.2.0-pre4.orig/src/x.h namot-2.2.0-pre4/src/x.h
--- namot-2.2.0-pre4.orig/src/x.h 2002-06-14 18:53:18.000000000 -0400
+++ namot-2.2.0-pre4/src/x.h 2013-07-10 12:16:09.000000000 -0400
@@ -17,8 +17,9 @@
*/
#define Long long
+#ifndef HAVE_PNG_H
#define Byte unsigned char
-
+#endif
extern void InitX();
#ifdef GRAPHICS
--- NEW FILE: namot.info ---
Package: namot
Version: 2.2.0-pre4
Revision: 1015
Source: mirror:sourceforge:%n/%n-%v.tgz
Source-MD5: 33cc542fa56d46385cde3f35805d812f
PatchFile: %n.patch
PatchFile-MD5: 6fec22145246209f36ed3888a2528850
Depends: <<
gsl-shlibs,
libncurses5-shlibs,
libpng16-shlibs,
openmotif4-shlibs,
python27,
readline6-shlibs,
x11
<<
BuildDepends: <<
autoconf2.6,
automake1.13,
gsl,
libncurses5-dev,
libpng16,
libtool2,
openmotif4,
readline6,
x11-dev
<<
ConfigureParams: --libexecdir=%p/lib --with-python=%p/bin/python2.7
UseMaxBuildJobs: false
CompileScript: <<
autoreconf -fi
./configure %c
make
<<
InstallScript: <<
make install DESTDIR=%d
<<
Description: Nucleic Acid MOdelling Tool
DescDetail: <<
The Nucleic Acid Modeling Tool(NAMOT) is a program to allow users to
manipulate molecular models of nucleic acids based on a set of reduced
co-ordinates developed at Los Alamos National Laboratory and the Max Planck
Institute for Biophysical Chemistry. It uses a combination of Xlib and Xt
functions to build the interface. External, user modifiable libraries
allow the user to customize the program. The use of an extended
description allows for the modeling of standard and unusual structures.
Thanks to Jack Howarth for numerous improvements.
<<
DocFiles: README AUTHORS COPYING NEWS
Homepage: http://namot.sourceforge.net/
License: Restrictive
Maintainer: W. G. Scott <wgsc...@users.sourceforge.net>
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