Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv9304
Added Files:
tax2tree-py.info
Log Message:
new pkg tax2tree 1.0
--- NEW FILE: tax2tree-py.info ---
Info2: <<
Package: tax2tree-py%type_pkg[python]
Version: 1.0
Revision: 1
Description: Greengenes taxonomy transfer software
Type: python (2.7)
License: GPL
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Depends: <<
numpy-py%type_pkg[python],
pycogent-py%type_pkg[python],
python%type_pkg[python]
<<
Suggests: <<
greentrees
<<
Source: mirror:sourceforge:tax2tree/tax2tree-v%v.tar.gz
Source-MD5: ddfafce49ce31278418dcdf4f1944351
Source-Checksum: SHA1(1340982b2c5483c1be8704a54213e350b98eee1d)
PatchScript: <<
perl -pi -e 's|\/usr\/bin\/env python|%p/bin/python%type_raw[python]|g'
`grep -rl "\/usr\/bin\/env python" *`
<<
CompileScript: <<
%p/bin/python%type_raw[python] setup.py build
<<
InfoTest: <<
TestScript: <<
#!/bin/sh -ev
cd tests
export PYTHONPATH=%b/build/lib:$PYTHONPATH
%p/bin/python%type_raw[python] test_consensus.py || exit 2
%p/bin/python%type_raw[python] test_nlevel.py || exit 2
%p/bin/python%type_raw[python] test_reroot.py || exit 2
%p/bin/python%type_raw[python] test_util.py || exit 2
<<
<<
InstallScript: <<
%p/bin/python%type_raw[python] setup.py install --prefix %p --root %d
mv %i/bin/nlevel %i/bin/nlevel-py%type_pkg[python]
cp %b/scripts/t2t_workflow %i/bin/t2t_workflow-py%type_pkg[python]
rm %i/lib/python%type_raw[python]/site-packages/t2t/*.pyc
<<
DocFiles: ChangeLog INSTALL README
PostInstScript: <<
update-alternatives --install %p/bin/nlevel nlevel
%p/bin/nlevel-py%type_pkg[python] %type_pkg[python] \
--slave %p/bin/t2t_workflow t2t_workflow
%p/bin/t2t_workflow-py%type_pkg[python]
<<
PreRmScript: <<
if [ $1 != "upgrade" ]; then
update-alternatives --remove nlevel %p/bin/nlevel-py%type_pkg[python]
fi
<<
DescDetail: <<
The tax2tree software package was developed in collaboration with
Greengenes for the purpose of transferring a taxonomy from one
tree to another. Specifically, the motivation was to reduce the
manual curation effort necessary for each release of Greengenes
by automating the decoration of taxonomy.
An improved Greengenes taxonomy with explicit ranks for ecological
and evolutionary analyses of bacteria and archaea. Daniel McDonald,
Morgan N Price, Julia Goodrich, Eric P Nawrocki, Todd Z DeSantis,
Alexander Probst, Gary L Andersen, Rob Knight and Philip Hugenholtz.
December 1, 2011, doi:10.1038/ismej.2011.139. The ISME Journal 6: 610-618.
<<
Homepage: http://tax2tree.sourceforge.net
<<
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