Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv19125
Added Files:
muscle.info muscle.patch
Log Message:
new pkg muscle 3.8.31
--- NEW FILE: muscle.patch ---
diff -ruN muscle3.8.31-orig/src/globalsosx.cpp muscle3.8.31/src/globalsosx.cpp
--- muscle3.8.31-orig/src/globalsosx.cpp 2013-07-12 19:31:34.000000000
-0400
+++ muscle3.8.31/src/globalsosx.cpp 2013-07-12 19:31:42.000000000 -0400
@@ -13,6 +13,7 @@
#include <netinet/icmp6.h>
#include <sys/vmmeter.h>
#include <sys/proc.h>
+#include <mach/vm_statistics.h>
#include <mach/task_info.h>
#include <mach/task.h>
#include <mach/mach_init.h>
--- NEW FILE: muscle.info ---
Package: muscle
Version: 3.8.31
Revision: 1
Description: Protein multiple sequence alignment software
License: Public Domain
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Source: http://www.drive5.com/%n/downloads%v/%n%v_src.tar.gz
Source-MD5: f767f00fd15f0c5db944d41936779e10
Source-Checksum: SHA1(2fe55db73ff4e7ac6d4ca692f8f213d1c5071dac)
SourceDirectory: %n%v
BuildDepends: dos2unix
PatchFile: %n.patch
PatchFile-MD5: 53dc681d2993f609c4b3e3b8b85cc8f5
PatchScript: <<
dos2unix src/globalsosx.cpp
%{default_script}
<<
GCC: 4.0
CompileScript: cd src; make
InstallScript: <<
#!/bin/sh -ev
mkdir -p %i/bin
cp -p src/muscle %i/bin/
cat > LICENSE << EOF
MUSCLE v%v by Robert C. Edgar
http://www.drive5.com/muscle
This software is donated to the public domain.
Please cite: Edgar, R.C. Nucleic Acids Res 32(5), 1792-97.
EOF
<<
DocFiles: LICENSE src/README.txt
Homepage: http://www.drive5.com/muscle
DescDetail: <<
MUSCLE is public domain multiple alignment software for protein and
nucleotide sequences. MUSCLE stands for multiple sequence comparison
by log-expectation.
Edgar, R.C. Nucleic Acids Res 32(5), 1792-97.
<<
DescPort: <<
/usr/include/mach/task_info.h:252:2: error: unknown type name
'vm_extmod_statistics_data_t'
Patch idea from http://trac.clozure.com/ccl/ticket/1019
<<
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