Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv25042
Added Files:
fasttree.info
Log Message:
fasttree 2.1.7
--- NEW FILE: fasttree.info ---
Package: fasttree
Version: 2.1.7
Revision: 1
Description: Fast inference of phylogenetic trees
License: GPL
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Depends: <<
gcc48-shlibs,
openmpi-shlibs
<<
BuildDepends: <<
openmpi
<<
Source: http://www.microbesonline.org/fasttree/FastTree-%v.c
NoSourceDirectory: true
Source-MD5: 209c15343a878f2b23c44cd326a094e1
Source-Checksum: SHA1(d9381924829e7d19d56154ebbde0e44044b4b7ab)
CompileScript: <<
gcc -O3 -finline-functions -funroll-loops -Wall -o FastTree FastTree-%v.c -lm
mpicc -DOPENMP -fopenmp -O3 -finline-functions -funroll-loops -Wall -o
FastTreeMP FastTree-%v.c -lm
<<
InstallScript: <<
mkdir %i/bin
cp FastTree FastTreeMP %i/bin
head -n 40 FastTree-%v.c > LICENSE
head -n 285 FastTree-%v.c | tail -n 245 > README
<<
DocFiles: LICENSE README
Homepage: http://www.microbesonline.org/fasttree/
DescDetail: <<
FastTree infers approximately-maximum-likelihood phylogenetic trees
from alignments of nucleotide or protein sequences. FastTree can handle
alignments with up to a million of sequences in a reasonable amount of
time and memory. For large alignments, FastTree is 100-1,000 times
faster than PhyML 3.0 or RAxML 7.
Price, M.N., Dehal, P.S., and Arkin, A.P. (2009) FastTree: Computing
Large Minimum-Evolution Trees with Profiles instead of a Distance
Matrix. Molecular Biology and Evolution 26:1641-1650,
doi:10.1093/molbev/msp077.
<<
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