Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv26154
Added Files:
bwa.info
Log Message:
new pkg bwa 0.7.5a
--- NEW FILE: bwa.info ---
Package: bwa
Version: 0.7.5a
Revision: 1
Description: Burrows-Wheeler Aligner
License: GPL
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Source: mirror:sourceforge:bio-bwa/%n-%v.tar.bz2
Source-MD5: 094cda30b8d7c8f8810803254662e106
Source-Checksum: SHA1(3ba4a2df24dc2a2578fb399dc77b3c240a5a18be)
CompileScript: <<
make
<<
InstallScript: <<
mkdir %i/bin
mkdir -p %i/share/man/man1
install -m 755 bwa qualfa2fq.pl xa2multi.pl %i/bin
install -m 644 bwa.1 %i/share/man/man1
<<
DocFiles: COPYING ChangeLog NEWS README.md
Homepage: http://bio-bwa.sourceforge.net/
DescDetail: <<
Software package for mapping low-divergent sequences against a large
reference genome, such as the human genome. It consists of three
algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm
is designed for Illumina sequence reads up to 100bp, while the rest
two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW
share similar features such as long-read support and split alignment,
but BWA-MEM, which is the latest, is generally recommended for high-
quality queries as it is faster and more accurate. BWA-MEM also has
better performance than BWA-backtrack for 70-100bp Illumina reads.
Li H. and Durbin R. (2009) Fast and accurate short read alignment
with Burrows-Wheeler Transform. Bioinformatics, 25:1754-60. [PMID: 19451168]
Li H. and Durbin R. (2010) Fast and accurate long-read alignment
with Burrows-Wheeler Transform. Bioinformatics, Epub. [PMID: 20080505]
<<
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