Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31594
Added Files:
cell-id.info cell-id.patch
Log Message:
new pkg cell-id 1.4.6
--- NEW FILE: cell-id.info ---
Package: cell-id
Version: 1.4.6
Revision: 1
Description: Microscopy cell segmentation software
License: LGPL
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Depends: <<
glib2-shlibs,
libtiff5-shlibs
<<
BuildDepends: <<
dos2unix,
glib2-dev,
libtiff5
<<
Source: mirror:sourceforge:cell-id/cell_id_%v.zip
Source-MD5: add16051f92ff4b95ba73619cfd33036
Source-Checksum: SHA1(d3e67b45af06d136b137ac2fca1a529e0f5f803b)
PatchFile: %n.patch
PatchFile-MD5: 7fddd59403735c9d5f7c01d41c2e18fb
PatchScript: <<
dos2unix Makefile
sed 's|@FINKPREFIX@|%p|g' < %{PatchFile} | patch -p1
<<
CompileScript: <<
make clean
make
<<
InstallScript: <<
mkdir -p %i/bin
cp cell %i/bin
<<
DocFiles: Cell-ID-help.txt GNU_Lesser_General_Public_License.txt README.txt
cell_id_description_of_output_file_R.txt
cell_id_description_of_output_files_PAW.txt parameters.txt
Homepage: https://sourceforge.net/projects/cell-id/
DescDetail: <<
Cell-ID is an open-source software designed for segmentation and quantification
of microscopy images of yeast cells. The program uses brightfield images to
identify cells, assigns a unique identifier number to each cell, scores
interior and boundary pixels, tracks the cells through time-series of images
and, in conjunction with fluorescence images, calculates various cellular
measures.
Gordon A, Colman-Lerner A, Chin TE, Benjamin KR, Yu RC,
Brent R. Single-cell quantification of molecules and rates
using open-source microscope-based cytometry. Nat Methods.
2007;4:175â181.
<<
--- NEW FILE: cell-id.patch ---
diff -ruN cell_id_1.4.6-orig/Makefile cell_id_1.4.6/Makefile
--- cell_id_1.4.6-orig/Makefile 2013-08-04 20:42:37.000000000 -0400
+++ cell_id_1.4.6/Makefile 2013-08-04 20:42:33.000000000 -0400
@@ -12,11 +12,11 @@
# the folder\s that contain libtiff.a and libglib-2.0.dll.a
# (-L\local\lib).
-CFLAGS = -Wall -static -I/local/include -I/local/include/glib-2.0 -L/local/lib
+CFLAGS = -Wall -I@FINKPREFIX@/include -I@FINKPREFIX@/include/glib-2.0
-I@FINKPREFIX@/lib/glib-2.0/include -L@FINKPREFIX@/lib
# the order of the linker commands is important!
cell : $(objects)
- gcc -o cell $(CFLAGS) $(objects) -lm -ltiff -lglib-2.0
+ $(CC) -o cell $(CFLAGS) $(objects) -lm -ltiff -lglib-2.0
cell.o: segment.h tif_routines.h date_and_time.h nums.h point.h image_type.h
align_image.h split_and_overlap.h parameters.h file_type.h
@@ -48,5 +48,6 @@
#oif.o: oif.h
clean:
- rm cell $(objects)
+ rm -f cell $(objects)
+
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