Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv6921
Modified Files:
coot.info
Log Message:
fixed url and integrated standalone refmac and consolidated monomer library
with refmac
Index: coot.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/coot.info,v
retrieving revision 1.25
retrieving revision 1.26
diff -u -d -r1.25 -r1.26
--- coot.info 9 Aug 2013 04:09:02 -0000 1.25
+++ coot.info 15 Aug 2013 02:38:14 -0000 1.26
@@ -1,15 +1,13 @@
Package: coot
Version: 0.7.1.0
-Revision: 4
+Revision: 5
SourceDirectory: %n-0.7.1
Distribution: 10.6, 10.7, 10.8
GCC: 4.0
-Source:
http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/coot/source/releases/%n-0.7.1.tar.gz
+Source:
http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/%n/source/releases/%n-0.7.1.tar.gz
Source-MD5: 94557d40bb2d1643b613c34fea10300b
-Source2:
http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/Dictionary/refmac_dictionary_v5.41.tar.gz
-Source2-MD5: e7acb760fcbbe663147f5245b6c523c4
-Source3:
http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz
-Source3-MD5: 257ab90d44f1c877ada96720dbb87c13
+Source2:
http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz
+Source2-MD5: 257ab90d44f1c877ada96720dbb87c13
###############################################################################
Description: Crystallographic molecular graphics
DescDetail: <<
@@ -40,7 +38,7 @@
fink (>= 0.24.12) ,
boost1.53.python27 (>= 1.53.0-1),
clipper-dev (>= 1:2.1.20130601-1),
- libccp4-dev (>= 6.3.1-1) ,
+ libccp4-dev (>= 6.3.1-2) ,
mmdb-dev (>= 1.25.3-1) ,
ssm-dev (>= 1.3-1) ,
atk1 (>= 1.28.0-1) ,
@@ -89,8 +87,8 @@
coot-shlibs (= 0.7.1.0-%r) ,
boost1.53.python27-shlibs (>= 1.53.0-1),
clipper-shlibs (>= 1:2.1.20130601-1),
- libccp4-shlibs (>= 6.3.1-1) ,
- libccp4-lib (>= 6.3.1-1) | ccp4 (>= 6.3.0-1),
+ libccp4-shlibs (>= 6.3.1-2) ,
+ libccp4-lib (>= 6.3.1-2) ,
mmdb-shlibs (>= 1.25.3-1) ,
ssm-shlibs (>= 1.3-1) ,
atk1-shlibs (>= 1.28.0-1) ,
@@ -126,8 +124,10 @@
pango1-xft2-ft219-shlibs (>= 1.24.5-4) ,
pygtk2-gtk-py27 ,
python27 ,
+ raster3d (>= 3.0-2-3) ,
rdkit-shlibs (>= 2013.03.2-4) ,
rdkit (>= 2013.03.2-4) ,
+ refmac (>=5.7.0032-1) ,
x11
<<
#
@@ -225,10 +225,10 @@
install_name_tool -change
/System/Library/Frameworks/Python.framework/Versions/2.6/Python
%p/lib/python2.6/config/libpython2.6.dylib %i/bin/coot-real
fi
-# This installs the refmac monomer library
+# This consolidates the refmac monomer library
mkdir -p %i/share/coot/lib/data
-cp -R ../monomers %i/share/coot/lib/data/monomers
-cp %i/share/coot/lib/data/monomers/ener_lib.cif %i/share/coot/lib/.
+ln -s %p/share/refmac/monomers/ener_lib.cif %i/share/coot/lib/.
+ln -s %p/share/refmac/monomers %i/share/coot/lib/data/.
# Reference structures should be in %i/share/coot/reference-structures
cp -R ../reference-structures %i/share/coot/.
cp -R * %i/share/coot/etc/.
@@ -242,12 +242,7 @@
echo "export COOT_REFMAC_LIB_DIR=%p/share/coot/lib" >> %i/bin/coot
echo "export COOT_PYTHON_DIR=%p/share/coot/python" >> %i/bin/coot
echo 'export COOT_SBASE_DIR="$CCP4/share/sbase"' >> %i/bin/coot
-echo 'export CLIBD="$CCP4/lib/data"' >> %i/bin/coot
-echo 'if [[ -f $CCP4/lib/data/symop.lib ]];then' >> %i/bin/coot
-echo ' export SYMINFO="$CCP4/lib/data/syminfo.lib"' >> %i/bin/coot
-echo 'else' >> %i/bin/coot
-echo " export SYMINFO=\"%p/share/ccp4/syminfo.lib\"" >> %i/bin/coot
-echo 'fi' >> %i/bin/coot
+echo 'export CLIBD="%p/share/ccp4"' >> %i/bin/coot
echo "export
PYTHONPATH=%p/lib/python2.7/site-packages:%p/lib/python2.7/site-packages/gtk-2.0:%p/share/coot/python"
>> %i/bin/coot
echo "%p/bin/coot-real \"\$@\" " >> %i/bin/coot
chmod a+x %i/bin/coot
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