Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15233
Modified Files:
coot.info coot-pre.info refmac.info
Log Message:
fixed cheesy nonrobust symlink hack in coot for refmac monomer lib
Index: coot.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/coot.info,v
retrieving revision 1.27
retrieving revision 1.28
diff -u -d -r1.27 -r1.28
--- coot.info 27 Aug 2013 16:43:41 -0000 1.27
+++ coot.info 5 Sep 2013 02:35:51 -0000 1.28
@@ -1,6 +1,6 @@
Package: coot
Version: 0.7.1.0
-Revision: 6
+Revision: 7
SourceDirectory: %n-0.7.1
Distribution: 10.6, 10.7, 10.8
GCC: 4.0
@@ -141,7 +141,6 @@
PatchFile-MD5: ac51a219f71aae370e33b68dbd80030d
PatchScript: <<
sed 's|@PREFIX@|%p|g' <%{PatchFile} | patch -p1
-#perl -pi -e 's|ccp4c=ccp4c|ccp4c=gpp4|g' configure
perl -pi -e 's|CXX\=\"libtool --mode\=link \$CXX\"|#CXX|g' configure
<<
###############################################################################
@@ -227,10 +226,6 @@
install_name_tool -change
/System/Library/Frameworks/Python.framework/Versions/2.6/Python
%p/lib/python2.6/config/libpython2.6.dylib %i/bin/coot-real
fi
-# This consolidates the refmac monomer library
-mkdir -p %i/share/coot/lib/data
-ln -s %p/share/refmac/monomers/ener_lib.cif %i/share/coot/lib/.
-ln -s %p/share/refmac/monomers %i/share/coot/lib/data/.
# Reference structures should be in %i/share/coot/reference-structures
cp -R ../reference-structures %i/share/coot/.
cp -R * %i/share/coot/etc/.
@@ -241,7 +236,7 @@
echo '#!/bin/sh -f ' > %i/bin/coot
echo 'export GUILE_WARN_DEPRECATED="no"' >> %i/bin/coot
echo "export LC_NUMERIC=C" >> %i/bin/coot
-echo "export COOT_REFMAC_LIB_DIR=%p/share/coot/lib" >> %i/bin/coot
+echo "export COOT_REFMAC_LIB_DIR=%p/share/refmac" >> %i/bin/coot
echo "export COOT_PYTHON_DIR=%p/share/coot/python" >> %i/bin/coot
echo 'export COOT_SBASE_DIR="%p/share/ccp4"' >> %i/bin/coot
echo 'export CLIBD="%p/share/ccp4"' >> %i/bin/coot
Index: refmac.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/refmac.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- refmac.info 29 Aug 2013 23:14:20 -0000 1.2
+++ refmac.info 5 Sep 2013 02:35:52 -0000 1.3
@@ -1,6 +1,6 @@
Package: refmac
Version: 5.7.0032
-Revision: 2
+Revision: 3
Source:
http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/%n/SourceEtal/%n5.7_source_v%v.tar.gz
Source-MD5: 6bde74d6fc1c7f32026ced6fd8741c99
Source2:
http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/%n/Dictionary/%n_dictionary_v5.41.tar.gz
@@ -20,12 +20,12 @@
InstallScript: <<
#!/bin/bash -efv
mkdir -p %i/bin
-mkdir -p %i/share/%n
+mkdir -p %i/share/%n/data
mkdir -p %i/etc/profile.d
cp refmac5 %i/bin/.
cp refmac5 %i/bin/%n
touch %i/share/%n/environ.def %i/share/%n/default.def
-cp -R monomers %i/share/%n/.
+cp -R monomers %i/share/%n/data/.
#
echo 'if [[ ! -f ${CINCL}/environ.def ]];then' >
%i/etc/profile.d/refmac.sh
echo ' export CINCL=%p/share/%n' >>
%i/etc/profile.d/refmac.sh
@@ -38,7 +38,7 @@
echo 'endif' >>
%i/etc/profile.d/refmac.csh
<<
RunTimeVars: <<
-CLIBD_MON: %p/share/%n/monomers/
+CLIBD_MON: %p/share/%n/data/monomers/
SYMINFO: %p/share/ccp4/syminfo.lib
ATOMSF: %p/share/ccp4/atomsf.lib
<<
Index: coot-pre.info
===================================================================
RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/coot-pre.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- coot-pre.info 27 Aug 2013 16:48:24 -0000 1.1
+++ coot-pre.info 5 Sep 2013 02:35:52 -0000 1.2
@@ -1,11 +1,11 @@
Package: coot-pre
Version: 0.8-pre
-Revision: 4747
+Revision: 4749
SourceDirectory: coot-%v
Distribution: 10.6, 10.7, 10.8
GCC: 4.0
Source:
http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/source/pre-releases/coot-%v-revision-%r.tar.gz
-Source-MD5: 049a0af2bbeda5d4a9761c682f74c8a0
+Source-MD5: acbce0f1e9eaeebab24f7e33a56e4460
Source2:
http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz
Source2-MD5: 257ab90d44f1c877ada96720dbb87c13
###############################################################################
@@ -228,10 +228,6 @@
install_name_tool -change
/System/Library/Frameworks/Python.framework/Versions/2.6/Python
%p/lib/python2.6/config/libpython2.6.dylib %i/bin/coot-real
fi
-# This consolidates the refmac monomer library
-mkdir -p %i/share/coot/lib/data
-ln -s %p/share/refmac/monomers/ener_lib.cif %i/share/coot/lib/.
-ln -s %p/share/refmac/monomers %i/share/coot/lib/data/.
# Reference structures should be in %i/share/coot/reference-structures
cp -R ../reference-structures %i/share/coot/.
cp -R * %i/share/coot/etc/.
@@ -242,7 +238,7 @@
echo '#!/bin/sh -f ' > %i/bin/coot
echo 'export GUILE_WARN_DEPRECATED="no"' >> %i/bin/coot
echo "export LC_NUMERIC=C" >> %i/bin/coot
-echo "export COOT_REFMAC_LIB_DIR=%p/share/coot/lib" >> %i/bin/coot
+echo "export COOT_REFMAC_LIB_DIR=%p/share/refmac" >> %i/bin/coot
echo "export COOT_PYTHON_DIR=%p/share/coot/python" >> %i/bin/coot
echo 'export COOT_SBASE_DIR="%p/share/ccp4"' >> %i/bin/coot
echo 'export CLIBD="%p/share/ccp4"' >> %i/bin/coot
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