Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv12526
Added Files:
fastlink.info fastlink.patch
Log Message:
fastlink 4.1p to 10.7
--- NEW FILE: fastlink.info ---
Package: fastlink
Version: 4.1p
Revision: 3
BuildDepends: fink (>= 0.24.12-1)
PatchFile: %n.patch
PatchFile-MD5: 86d3527580ddfc90f3b3652170b9f322
Source: ftp://ftp.ncbi.nih.gov/pub/%n/%n.tar.Z
SourceRename: %n-%v.tar.Z
SourceDirectory: %n
Source-MD5: a4c019d2e0d5716002354877e709f29d
Source-Checksum: SHA1(f7c64d134cfe5f057153b1b985888048ae00bfec)
CompileScript: echo "we compile in the install phase"
InstallScript: <<
#!/bin/bash -ev
cd %v/src
install -m755 -d %d%p/bin
make installfast BINDIR=%d%p/bin
<<
Description: Genetic linkage anaylysis programs
DocFiles: <<
README README.AIX README.ALPHAVMS README.DOS README.Digital
README.ILINK README.IRIX README.Linux README.TreadMarks README.VAX
README.VMS README.allele README.bugreport README.checkpoint
README.constants README.diseq README.djgpp README.install README.loopfile
README.lselect README.makefile README.mapfun README.memory README.p4
README.parallel README.portability README.scaling README.time README.trouble
README.unknown README.updates loops.ps paper1.ps paper2.ps paper3.ps
paper4.ps paper5.ps paper6.ps paper7.ps traverse.ps unknown.ps
<<
DescDetail: <<
Genetic linkage analysis is a statistical technique used to map genes and
find the approximate location of disease genes. There was a standard
software package for genetic linkage called LINKAGE. FASTLINK is a
significantly modified and improved version of the main programs of
LINKAGE that runs much faster sequentially, can run in parallel, allows
the user to recover gracefully from a computer crash, and provides
abundant new documentation. FASTLINK has been used in over 800
published genetic linkage studies.
<<
Homepage: http://www.ncbi.nlm.nih.gov/CBBresearch/Schaffer/fastlink.html
License: Restrictive
Maintainer: Jeremy Erwin <jer...@ponymail.com>
--- NEW FILE: fastlink.patch ---
diff -ruN fastlink/4.1P/src/Makefile fastlink.new/4.1P/src/Makefile
--- fastlink/4.1P/src/Makefile Sat Jul 3 15:13:38 1999
+++ fastlink.new/4.1P/src/Makefile Tue Feb 24 14:20:19 2004
@@ -44,7 +44,6 @@
# Destination bin directory for executables. Note: this
# directory *must* exist, or compilation will fail during
# linkage.
-BINDIR = ./
# Compiler optimization flag. Comment this out
# if your compiler
@@ -70,7 +69,7 @@
#SYSDEP = -DSUNOS_4_1_X_GCC
#SYSDEP = -DSOLARIS
#SYSDEP = -D_POSIX_SOURCE
-#SYSDEP =
+SYSDEP = -Dmac
######################################################
diff -ruN fastlink/4.1P/src/commondefs.h fastlink.new/4.1P/src/commondefs.h
--- fastlink/4.1P/src/commondefs.h Fri Sep 5 12:26:17 2003
+++ fastlink.new/4.1P/src/commondefs.h Tue Feb 24 14:08:38 2004
@@ -33,7 +33,7 @@
/* Shriram: end */
/* cgh */
-#if !defined(vms)
+#if !defined(vms) && !defined(mac)
#include <malloc.h>
#endif
diff -ruN fastlink/4.1P/src/unknown.h fastlink.new/4.1P/src/unknown.h
--- fastlink/4.1P/src/unknown.h Fri Sep 5 12:26:26 2003
+++ fastlink.new/4.1P/src/unknown.h Tue Feb 24 14:06:09 2004
@@ -17,7 +17,7 @@
#include <string.h>
/* cgh */
-#if !defined(vms)
+#if !defined(vms) && !defined(mac)
#include <malloc.h>
#endif
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