Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv11845
Modified Files:
emboss.info emboss.patch
Log Message:
upstream fixes, including one for a crash on intel Macs
Index: emboss.patch
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.patch,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- emboss.patch 20 Feb 2006 23:07:11 -0000 1.2
+++ emboss.patch 4 Apr 2006 21:33:47 -0000 1.3
@@ -1,20 +1,78 @@
-diff -Naur EMBOSS-3.0.0/ajax/Makefile.in EMBOSS-3.0.0-patched/ajax/Makefile.in
---- EMBOSS-3.0.0/ajax/Makefile.in 2005-07-15 06:59:14.000000000 -0400
-+++ EMBOSS-3.0.0-patched/ajax/Makefile.in 2006-02-02 20:40:23.000000000
-0500
-@@ -86,7 +86,8 @@
- libajax_la_OBJECTS = $(am_libajax_la_OBJECTS)
- @[EMAIL PROTECTED] = -rpath $(libdir)
- @[EMAIL PROTECTED] = -rpath $(libdir)
--libajaxg_la_LIBADD =
-+libajaxg_la_LIBADD = libajax.la ../plplot/libplplot.la
-+libajaxg_la_DEPENDENCIES = libajax.la ../plplot/libplplot.la
- am__libajaxg_la_SOURCES_DIST = ajgraph.c ajhist.c
[...6294 lines suppressed...]
+ typedef struct EmbSBtreeEntry
+ {
+ AjBool do_id;
+@@ -48,10 +118,16 @@
+
+ ajint idorder;
+ ajint idfill;
++ ajint idsecorder;
++ ajint idsecfill;
+ ajint acorder;
+ ajint acfill;
++ ajint acsecorder;
++ ajint acsecfill;
+ ajint svorder;
+ ajint svfill;
++ ajint svsecorder;
++ ajint svsecfill;
+
+ ajint kworder;
+ ajint kwfill;
Index: emboss.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- emboss.info 21 Feb 2006 01:42:13 -0000 1.3
+++ emboss.info 4 Apr 2006 21:33:46 -0000 1.4
@@ -1,6 +1,6 @@
Package: emboss
Version: 3.0.0
-Revision: 101
+Revision: 102
Depends: %N-ajax3-shlibs (>= %v-%r), %N-nucleus3-shlibs (>= %v-%r),
%N-plplot5-shlibs (>= %v-%r), x11, libpng3-shlibs, libjpeg-shlibs, gd2-shlibs,
system-java14
BuildDepends: libpng3, libjpeg, gd2, libiconv-dev, x11-dev, system-java14-dev
#Replaces: emboss (<< 2.7.1-2)
@@ -9,6 +9,7 @@
Primary: ftp://emboss.open-bio.org/pub/EMBOSS/
<<
Source-MD5: fa72feded9ab9272e3e731c09f545dcc
+SetCPPFLAGS: -Dstat64=stat
Patch: %n.patch
PatchScript: <<
perl -pi -e 's,([<"])(pcre)(.*.h[>"]),\1EMBOSS/\2\3,' ajax/*
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