Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs5.sourceforge.net:/tmp/cvs-serv9875
Added Files:
ccp4-g77.info
Log Message:
people still want a g77 version of this
--- NEW FILE: ccp4-g77.info ---
Package: ccp4-g77
Version: 6.0.1
Revision: 1001
GCC: 4
Architecture: powerpc
# use the ccp4 package on Intel
Source: ftp://ftp.ccp4.ac.uk/ccp4/%v/packed/ccp4-%v-core-src.tar.gz
Source-MD5: bd3ff43388b58841de79bcc23ebf81e3
SourceDirectory: ccp4-%v
Source2: ftp://ftp.ccp4.ac.uk/ccp4/6.0.0/packed/phaser-1.3.2-cctbx-src.tar.gz
Source2-MD5: e4eee45ca8a299242a1089e35e63c7a0
Source3: http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink/XCCPJiffy-custom.gz
Source3-MD5: 21568dd2475505929573a3fd452c538f
#Source4:
http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink/ccp4_i686-apple-darwin8.6.1_libtool.gz
#Source4-MD5: e40104835406c75c8aee16471b2dd06e
Depends: x11, tcltk, blt
BuildDepends: g77 (>= 3.4.3-100), f2c, fort77, tcltk-dev
Replaces: ccp4libs, ccp4libs-shlibs, ccp4-shlibs, ccp4, ccp4-dev, mosflm (<=
6.2.3-2), mosflm-small (<= 6.2.3-2), refmac (<= 5.1999-3), bundle-ccp4,
clipper-bin, ccp4-gfortran, ccp4-gfortran-dev, bundle-ccp4-powerpc
Conflicts: ccp4-shlibs, ccp4, ccp4-dev, bundle-ccp4-intel, bundle-ccp4-powerpc,
ccp4-gfortran, ccp4-gfortran-dev
NoSetCPPFLAGS: true
NoSetLDFLAGS: true
#
################################################################################
#Patch: ccp4.patch
PatchScript: <<
#!/bin/zsh -efv
#
umask 0022
# This is temporary until they put the phaser tarball in the right directory.
cp -r ../ccp4-6.0/lib/cctbx lib/cctbx
cp -r ../ccp4-6.0/lib/src/* lib/src/.
cp -r ../ccp4-6.0/src/phaser src/phaser
#
# Now do the patch
sed 's|@PREFIX@|%p|g' <%a/ccp4.patch | patch -p1
# setup script for tcsh, zsh and bash users
export TEMPXTAL=$PWD:h
#
perl -pi.bak -e 's|/xtal|\$TEMPXTAL|g' include/ccp4.setup* # build prefix
(changed in install)
perl -pi.bak -e 's|/prefix|%p|g' include/ccp4.setup* # location of
tcktk, blt
perl -pi.bak -e 's|/usr/local/bin|%p/bin|g' include/ccp4.setup* # same
perl -pi.bak -e 's|limit stacksize 65536|limit stacksize unlimited|g'
include/ccp4.setup* # same
#
perl -pi.bak -e 's|SW_PREFIX|%p|g' **/configure # location of tcktk,
blt
cp include/ccp4.setup-dist include/ccp4.setup
rm -f include/ccp4.setup-bash **/configure.bak include/ccp4.setup*.bak
#
# Set up XCCPJiffy wrapper scripts in $CCP4/etc
# These are small wrapper scripts for xplot84driver and xloggraph generated by
the patch
chmod a+x etc/x*
# Fix the dylib install path in configure
perl -pi.bak -e 's|\$rpath|%p/lib/ccp4-%v|g' **/configure
# We need the mmdbold clipper libraries built for COOT:
perl -pi.bak -e 's|enable_mmdbold=no|enable_mmdbold=yes|g'
lib/clipper/configure*
<<
################################################################################
CompileScript: <<
#!/bin/zsh -efv
umask 0022
# These are required for the build environment
export TEMPXTAL=$PWD:h
source include/ccp4.setup-zsh
export DYLD_LIBRARY_PATH=$CLIB
export rpath=%p/lib/ccp4-%v
export RPATH=%p/lib/ccp4-%v
# The cctbx sub-package requires us to use the system's own Python
export
PATH=/System/Library/Frameworks/Python.framework/Versions/Current/bin:$PATH
export PYTHONHOME="/System/Library/Frameworks/Python.framework/Versions/Current"
export
PYTHONPATH="/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3"
# g77 is no longer default, so we have to specify it.
# Build static libs only for now. (Problems with dylibs and g++-4).
#
FC="g77" FOPTIM="-O0" CC="gcc" CXX="g++" ./configure --with-x Darwin
#
# fix some post-configure bugs by getting rid of -lg2c
perl -pi.bak -e 's|-lg2c||g' x-windows/**/*akefile*
#
# change molrep optimization (needed for gfortran):
# perl -pi.bak -e "s|molrep_FLAGS='-fno-second-underscore
-O1'|molrep_FLAGS='-fno-second-underscore -O0'|g" src/Makefile
# perl -pi.bak -e 's|FC = g77 -fno-second-underscore||g'
x-windows/XCCPJIFFY/Makefile
perl -pi -e 's| -lgfortran||g' x-windows/XCCPJIFFY/*akefile*
perl -pi -e 's|gfortran|g77|g' x-windows/XCCPJIFFY/*akefile*
#################
make -i
make -i install
#################
# xloggraph will fail, but we will link it with fort77 below
#
# Make wrappers for xplot84driver and xloggraph, so rename the executables
cd x-windows/XCCPJIFFY
cp xplot84driver $CBIN/xplot84driver.exe
rm -f $CBIN/xplot84driver
#
# Manually link xloggraph with fort77 (fails in make)
echo ""
echo "**********************************************************************"
echo "Re-linking xloggraph with fort77. Ignore previous error messages."
echo "**********************************************************************"
echo ""
#
perl -pi.bak -e 's|FC = g77 -fno-second-underscore||g' Makefile
make -i xloggraph 2>/dev/null
fort77 -o xloggraph msg_box.o ZDr2d.o EditString.o hardcopy_ctrl.o xloggraph.o
log_file.o tom_fortran_interface.o bits_and_pieces.o graphics.o -g -Os
-I/usr/include/X11R6 -L/usr/X11R6/lib -lXaw -lXmu -lXt -lSM -lICE -lXpm -lXext
-lX11 -lm
#
sleep 10
#
cp xloggraph $CBIN/xloggraph.exe
if [[ -x $CBIN/xloggraph ]];then
rm -f $CBIN/xloggraph
fi
cd ../..
#
# Cleanup:
#
# make realclean
/bin/rm -f **/*.o
/bin/rm -f **/*.bak
#/bin/rm -R src
#/bin/rm -R x-windows
#/bin/rm -R unsupported
/bin/rm -R testcomp*
/bin/rm -R BINARY*
cd $CLIB
/bin/rm -f **/*.c
/bin/rm -f **/*.f
/bin/rm -f **/*.cpp
echo "Compile Phase Completed!"
echo "There are $(command ls -1 $CBIN | wc -l) programs in $CBIN; "
echo "there should be 200"
<<
################################################################################
InstallScript: <<
#!/bin/zsh -efv
umask 0022
export TEMPXTAL=$PWD:h
source include/ccp4.setup-zsh
export DYLD_LIBRARY_PATH=$CLIB
ORIGDIR=$(dirname $PWD)
# Change environment scripts to match final installation
perl -pi -e 's|\$TEMPXTAL|%p/share/xtal|g' include/ccp4.setup* # install
prefix
#
#
cp ../XCCPJiffy-custom.gz XCCPJiffy.gz ; gunzip XCCPJiffy.gz; chmod a+x
XCCPJiffy
perl -pi -e 's|5.0.1|%v|g' XCCPJiffy
mv -f XCCPJiffy lib/X11/app-defaults/XCCPJiffy
#
perl -pi.bak -e 's|/src/fink.build/ccp4-%v-%r|/share/xtal|g' bin/clipper-config
rm -f bin/clipper-config.bak
perl -pi.bak -e 's|lclipper |lclipper-core |g' bin/clipper-config
rm -f bin/clipper-config.bak
perl -pi.bak -e 's|lib/lib -lrfftw -lfftw |lib/ccp4-%v -lsrfftw -lsfftw |g'
bin/clipper-config
rm -f bin/clipper-config.bak
#
# Fix path in libfoo.la libtool files:
#
perl -pi.bak -e 's|/src/fink.build/ccp4-%v-%r/ccp4-%v/lib|/lib/ccp4-%v|g'
lib/**/*.la
rm -f lib/**/*.la.bak
#
# Now install:
#
mkdir -p %i/lib
cp -R lib %i/lib/ccp4-%v
mkdir -p %i/bin
#
mkdir -p %i/share/xtal/ccp4-%v/help
mkdir -p %i/share/man/man1
# set up man pages in a fink-compliant manner
cd $PWD/doc
mv rasmol.doc eightbit_rasmol.doc
foreach docfilepage ( *.doc )
cp ${docfilepage} %i/share/man/man1/${docfilepage:r}.1
cp ${docfilepage} %i/share/xtal/ccp4-%v/help/${docfilepage:r}
end
# back to build directory
cd ..
#
/bin/rm -rf lib
#/bin/mv lib lib-save
cp -R * %i/share/xtal/ccp4-%v/.
ln -s %p/lib/ccp4-%v %i/share/xtal/ccp4-%v/lib
#
# making scripts for %p/etc/profile.d
mkdir -p %i/etc/profile.d
#
echo "source %p/share/xtal/ccp4-%v/include/ccp4.setup" >
%i/etc/profile.d/ccp4.csh
echo "setenv CLIB %p/lib/ccp4-%v " >>
%i/etc/profile.d/ccp4.csh
#
echo "if [ -z \$ZSH_NAME ];then " >
%i/etc/profile.d/ccp4.sh
echo " source %p/share/xtal/ccp4-%v/include/ccp4.setup-sh " >>
%i/etc/profile.d/ccp4.sh
echo "else " >>
%i/etc/profile.d/ccp4.sh
echo " source %p/share/xtal/ccp4-%v/include/ccp4.setup-zsh" >>
%i/etc/profile.d/ccp4.sh
echo "fi " >>
%i/etc/profile.d/ccp4.sh
echo "export CLIB=%p/lib/ccp4-%v " >>
%i/etc/profile.d/ccp4.sh
#
chmod a+x %i/etc/profile.d/ccp4.*
#
chmod a+x %i/share/xtal/ccp4-%v/ccp4i/etc/osx_ccp4_mail
#
# chmod a+x %i/share/xtal/ccp4-%v/etc/ccp4help
#
ranlib %i/lib/ccp4-%v/*.a
ranlib %i/lib/ccp4-%v/**/*.a
#
<<
################################################################################
PostInstScript: <<
# Make the user read the license conditions
more %p/share/xtal/ccp4-%v/conditions.txt
<<
################################################################################
################################################################################
SplitOff: <<
Package: %N-dev
BuildDependsOnly: true
Description: CCP4 static libraries and libtool files
Files:<<
lib/ccp4-%v/*.a
lib/ccp4-%v/*.la
<<
DocFiles: CHANGES COPYING INSTALL INSTALL.html INSTALL.ps README PROBLEMS
academic_software_licence.pdf
<<
################################################################################
Description: Macromolecular crystallography package
DescDetail: <<
These are the ccp4 programs compiled with g77 instead of gfortran .
The (currently default) g77 version won't work on intel.
CCP4 macromolecular crystallography suite has approximately
200 programs and utilities. This version included Clipper
libraries, and ccif and phaser. If you need cctbx, please
install the cctbx fink package separately.
Type "ccp4help" for a summary listing of all ccp4 programs.
Type "ccp4help foo" for a detailed description of program "foo."
Invoke optional ccp4i gui for the first run using: sudo ccp4i
Thereafter, invoke without sudo.
This version compiles with the Apple Lapack/Blas framework
License agreement is part of configure file -- print out form and mail in,
additional comments at http://chemistry.ucsc.edu/~wgscott/xtal/ccp4.html
CCP4 files will be installed under /sw/share/xtal/ccp4-6.0.1
This revision includes all available CCP4 patches as of Feb 26, 2006.
and new bash and zsh command completions specific to ccp4.
<<
DocFiles: README CHANGES COPYING PROBLEMS INSTALL INSTALL.html INSTALL.ps
ccp4i_installation.html academic_software_licence.pdf
academic_software_licence.ps.gz academic_software_licence.rtf
Homepage: http://www.ccp4.ac.uk
License: Commercial
Maintainer: W. G. Scott <[EMAIL PROTECTED]>
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