Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs5.sourceforge.net:/tmp/cvs-serv10255
Modified Files:
biopython-py.info
Added Files:
biopython-py.patch
Log Message:
new upstream
Index: biopython-py.info
===================================================================
RCS file:
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/biopython-py.info,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- biopython-py.info 27 Sep 2006 01:48:49 -0000 1.7
+++ biopython-py.info 2 Apr 2007 02:14:41 -0000 1.8
@@ -1,6 +1,6 @@
Info2: <<
Package: biopython-py%type_pkg[python]
-Version: 1.42
+Version: 1.43
Revision: 1001
Type: python (2.3 2.4 2.5)
Depends: python%type_pkg[python], python-mx-py%type_pkg[python],
numeric-py%type_pkg[python], reportlab-py%type_pkg[python] (>= 1.20-1011)
@@ -8,8 +8,8 @@
Replaces: python-biopython-py%type_pkg[python]
#Provides: python-biopython-py%type_pkg[python]
Source: http://biopython.org/DIST/biopython-%v.tar.gz
-Source-MD5: 6d9bf58d0fcfa5a3b2053ad419069ff3
-#Patch: %{ni}.patch
+Source-MD5: 3c275b321bb1db7d8bda764913aaedcd
+Patch: %{ni}.patch
CompileScript: %p/bin/python%type_raw[python] setup.py build
InstallScript: <<
%p/bin/python%type_raw[python] setup.py install --root=%d
--- NEW FILE: biopython-py.patch ---
diff -Naur biopython-1.43/setup.py biopython-1.43-patched/setup.py
--- biopython-1.43/setup.py 2007-03-17 15:21:04.000000000 -0400
+++ biopython-1.43-patched/setup.py 2007-04-01 22:02:12.000000000 -0400
@@ -112,15 +112,14 @@
# Compile KDTree ? Not compiled by default
- print "\n*** Bio.KDTree *** NOT built by default "
- kdtree_msg = """
-The Bio.PDB.NeighborSearch module depends on the Bio.KDTree module,
-which in turn, depends on C++ code that does not compile cleanly on
-all platforms. Hence, Bio.KDTree is not built by default.
-
-Would you like to build Bio.KDTree ?"""
-
- if get_yes_or_no (kdtree_msg, 0):
+# print "\n*** Bio.KDTree *** NOT built by default "
+# kdtree_msg = """
+#The Bio.PDB.NeighborSearch module depends on the Bio.KDTree module,
+#which in turn, depends on C++ code that does not compile cleanly on
+#all platforms. Hence, Bio.KDTree is not built by default.
+#
+#Would you like to build Bio.KDTree ?"""
+# if get_yes_or_no (kdtree_msg, 0):
NUMPY_PACKAGES.append("Bio.KDTree")
NUMPY_EXTENSIONS.append(
CplusplusExtension('Bio.KDTree._CKDTree',
-------------------------------------------------------------------------
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