Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory sc8-pr-cvs17:/tmp/cvs-serv21185
Modified Files:
emboss.info emboss.patch
Log Message:
move to stable
Index: emboss.patch
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/emboss.patch,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- emboss.patch 15 Jul 2006 11:24:03 -0000 1.1
+++ emboss.patch 15 Jul 2007 16:51:43 -0000 1.2
@@ -1,6483 +1,24 @@
-diff -Naur EMBOSS-3.0.0/ajax/ajfile.c EMBOSS-3.0.0-patched/ajax/ajfile.c
---- EMBOSS-3.0.0/ajax/ajfile.c 2005-07-06 07:34:53.000000000 -0400
-+++ EMBOSS-3.0.0-patched/ajax/ajfile.c 2006-02-19 16:35:44.000000000 -0500
-@@ -3064,8 +3064,10 @@
- #endif
- #endif
- /* skip deleted files with inode zero */
-+#ifndef __CYGWIN__
- if(!de->d_ino)
- continue;
-+#endif
[...6466 lines suppressed...]
-@@ -48,10 +118,16 @@
-
- ajint idorder;
- ajint idfill;
-+ ajint idsecorder;
-+ ajint idsecfill;
- ajint acorder;
- ajint acfill;
-+ ajint acsecorder;
-+ ajint acsecfill;
- ajint svorder;
- ajint svfill;
-+ ajint svsecorder;
-+ ajint svsecfill;
++#if !defined(__APPLE__) && !defined(__FreeBSD__)
+ #include <crypt.h>
+ #endif
- ajint kworder;
- ajint kwfill;
Index: emboss.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- emboss.info 15 Jul 2006 15:06:45 -0000 1.4
+++ emboss.info 15 Jul 2007 16:51:43 -0000 1.5
@@ -1,14 +1,14 @@
Package: emboss
-Version: 3.0.0
-Revision: 102
-Depends: %N-ajax3-shlibs (>= %v-%r), %N-nucleus3-shlibs (>= %v-%r),
%N-plplot5-shlibs (>= %v-%r), x11, libpng3-shlibs, libjpeg-shlibs, gd2-shlibs,
system-java14
+Version: 4.1.0
+Revision: 4
+Depends: %N-ajax4-shlibs (>= %v-%r), %N-nucleus4-shlibs (>= %v-%r),
%N-plplot5-shlibs (>= %v-%r), x11, libpng3-shlibs, libjpeg-shlibs, gd2-shlibs,
system-java14
BuildDepends: libpng3, libjpeg, gd2, libiconv-dev, x11-dev, system-java14-dev
#Replaces: emboss (<< 2.7.1-2)
Source: mirror:custom:EMBOSS-%v.tar.gz
CustomMirror: <<
Primary: ftp://emboss.open-bio.org/pub/EMBOSS/old/%v/
<<
-Source-MD5: fa72feded9ab9272e3e731c09f545dcc
+Source-MD5: a08ed3834eb249162196df7ab889fd4c
SetCPPFLAGS: -Dstat64=stat
Patch: %n.patch
PatchScript: <<
@@ -27,21 +27,21 @@
<<
SplitOff10: <<
- Package: %N-ajax3-shlibs
+ Package: %N-ajax4-shlibs
Depends: %N-plplot5-shlibs (>= %v-%r), libpng3-shlibs, libjpeg-shlibs,
gd2-shlibs, libiconv
DocFiles: ChangeLog COPYING README
Files: <<
- lib/EMBOSS/libajax.3*.dylib
- lib/EMBOSS/libajaxg.3*.dylib
+ lib/EMBOSS/libajax.4*.dylib
+ lib/EMBOSS/libajaxg.4*.dylib
<<
Shlibs: <<
- %p/lib/EMBOSS/libajax.3.dylib 4.0.0 %n (>= 3.0.0-4)
- %p/lib/EMBOSS/libajaxg.3.dylib 4.0.0 %n (>= 3.0.0-4)
+ %p/lib/EMBOSS/libajax.4.dylib 5.0.0 %n (>= 4.0.0-1)
+ %p/lib/EMBOSS/libajaxg.4.dylib 5.0.0 %n (>= 4.0.0-1)
<<
<<
SplitOff11: <<
- Package: %N-ajax3-dev
- Depends: %N-ajax3-shlibs (= %v-%r)
+ Package: %N-ajax4-dev
+ Depends: %N-ajax4-shlibs (= %v-%r)
Conflicts: %N-dev
Replaces: %N-dev
DocFiles: ChangeLog COPYING README
@@ -55,22 +55,22 @@
<<
SplitOff20: <<
- Package: %N-nucleus3-shlibs
- Depends: %N-ajax3-shlibs (>= %v-%r)
- Replaces: %N (<< 3.0.0-101)
+ Package: %N-nucleus4-shlibs
+ Depends: %N-ajax4-shlibs (>= %v-%r)
+ Replaces: %N (<< 4.0.0-1)
DocFiles: ChangeLog COPYING README
Files: <<
- lib/EMBOSS/libnucleus.3*.dylib
+ lib/EMBOSS/libnucleus.4*.dylib
<<
Shlibs: <<
- %p/lib/EMBOSS/libnucleus.3.dylib 4.0.0 %n (>= 3.0.0-4)
+ %p/lib/EMBOSS/libnucleus.4.dylib 5.0.0 %n (>= 4.0.0-1)
<<
<<
SplitOff21: <<
- Package: %N-nucleus3-dev
- Depends: %N-nucleus3-shlibs (= %v-%r)
+ Package: %N-nucleus4-dev
+ Depends: %N-nucleus4-shlibs (= %v-%r)
Conflicts: %N-dev
- Replaces: %N-dev, %N (<< 3.0.0-101)
+ Replaces: %N-dev, %N (<< 4.0.0-1)
DocFiles: ChangeLog COPYING README
Files: <<
lib/libnucleus*
@@ -83,7 +83,7 @@
SplitOff30: <<
Package: %N-plplot5-shlibs
Depends: libpng3-shlibs, libjpeg-shlibs, gd2-shlibs, libiconv, x11
- Replaces: %N (<< 3.0.0-101)
+ Replaces: %N (<< 4.0.0-1)
DocFiles: ChangeLog COPYING README
Files: <<
lib/EMBOSS/libplplot.5*.dylib
@@ -96,7 +96,7 @@
Package: %N-plplot5-dev
Depends: %N-plplot5-shlibs (= %v-%r)
Conflicts: %N-dev
- Replaces: %N-dev, %N (<< 3.0.0-101)
+ Replaces: %N-dev, %N (<< 4.0.0-1)
DocFiles: ChangeLog COPYING README
Files: <<
lib/libplplot*
@@ -114,7 +114,9 @@
EMBOSS_DATA: %p/share/EMBOSS/data
<<
-DocFiles: AUTHORS ChangeLog COMPAT COPYING FAQ KNOWN_BUGS LICENSE NEWS README
THANKS
+DocFiles: <<
+ AUTHORS ChangeLog COMPAT COPYING FAQ KNOWN_BUGS LICENSE NEWS README THANKS
+<<
Description: Molecular Biology Open Software Suite
DescDetail: <<
EMBOSS is a free Open Source software analysis package specially
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