Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs17:/tmp/cvs-serv10415/main/finkinfo/sci
Modified Files:
Tag: pangocairo-branch
emboss.info sparky-py.info sparky-py.patch
Added Files:
Tag: pangocairo-branch
zhu3d.info
Log Message:
merge from HEAD
Index: sparky-py.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/sparky-py.info,v
retrieving revision 1.5.2.2
retrieving revision 1.5.2.3
diff -u -d -r1.5.2.2 -r1.5.2.3
--- sparky-py.info 19 Jul 2007 22:23:33 -0000 1.5.2.2
+++ sparky-py.info 24 Jul 2007 17:36:45 -0000 1.5.2.3
@@ -1,12 +1,12 @@
Info2: <<
Package: sparky-py%type_pkg[python]
-Version: 3.113
+Version: 3.114
Revision: 1000
GCC: 4.0
Maintainer: Jack Howarth <[EMAIL PROTECTED]>
Type: python (2.3 2.4 2.5)
Source: http://www.cgl.ucsf.edu/home/sparky/distrib-%v/sparky-source-%v.tar.gz
-Source-MD5: f3491553b1d00d56eb43cec9f9fa290b
+Source-MD5: 8a26112637acc8cc3f28aadcbf87a892
SourceDirectory: sparky
Depends: python%type_pkg[python], tcltk, x11
BuildDepends: python%type_pkg[python], tcltk-dev, x11-dev
--- NEW FILE: zhu3d.info ---
Package: zhu3d
Version: 2.9.8
Revision: 1003
Source: http://www.kde-apps.org/CONTENT/content-files/43071-%n-%v.tar.gz
Depends: glib2-shlibs, libgettext3-shlibs, qt4-x11-core-shlibs,
qt4-x11-gui-shlibs, libiconv, libpng3-shlibs, x11, x11-shlibs
BuildDepends: glib2-dev, libgettext3-dev, libiconv-dev, libpng3, x11-dev,
qt4-x11
Maintainer: Jack Fink <[EMAIL PROTECTED]>
Homepage: http://kde-apps.org/content/show.php/Zhu3D?content=43071
License: GPL
Description: Functions viewer/animator, uses OpenGL
GCC: 4.0
Source-MD5: 7c7fc321b13d856b1616d7f33d206028
SourceDirectory: %n-%v
PatchScript: <<
%p/lib/qt4-x11/bin/qmake zhu3d.pro
perl -pi -e "s/-prebind/-undefined dynamic_lookup/" Makefile
<<
CompileScript: <<
make
<<
InstallScript: <<
mkdir -p %i/bin %i/share/%n/doc %i/share/%n/examples
cp -p zhu3d %i/bin/
cp -r doc/* %i/share/%n/doc/
cp -r work/* %i/share/%n/examples/
cp -r syste* %i/share/%n/
<<
DocFiles: license.gpl:COPYING readme.txt:README
Index: emboss.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.7.2.2
retrieving revision 1.7.2.3
diff -u -d -r1.7.2.2 -r1.7.2.3
--- emboss.info 11 Apr 2007 15:25:00 -0000 1.7.2.2
+++ emboss.info 24 Jul 2007 17:36:45 -0000 1.7.2.3
@@ -1,16 +1,16 @@
Package: emboss
-Version: 4.1.0
-Revision: 4
-Depends: %N-ajax4-shlibs (>= %v-%r), %N-nucleus4-shlibs (>= %v-%r),
%N-plplot5-shlibs (>= %v-%r), x11, libpng3-shlibs, libjpeg-shlibs, gd2-shlibs,
system-java14
+Version: 5.0.0
+Revision: 1
+Depends: %N-ajax5-shlibs (>= %v-%r), %N-nucleus5-shlibs (>= %v-%r),
%N-plplot5-shlibs (>= %v-%r), x11, libpng3-shlibs, libjpeg-shlibs, gd2-shlibs,
system-java14
BuildDepends: libpng3, libjpeg, gd2, libiconv-dev, x11-dev, system-java14-dev
#Replaces: emboss (<< 2.7.1-2)
Source: mirror:custom:EMBOSS-%v.tar.gz
CustomMirror: <<
Primary: ftp://emboss.open-bio.org/pub/EMBOSS/
<<
-Source-MD5: a08ed3834eb249162196df7ab889fd4c
+Source-MD5: be4c895220ad34afd65d450ba7d8e34b
SetCPPFLAGS: -Dstat64=stat
-Patch: %n.patch
+#Patch: %n.patch
PatchScript: <<
perl -pi -e 's,([<"])(pcre)(.*.h[>"]),\1EMBOSS/\2\3,' ajax/*
perl -pi -e 's,(pcre\S*\.h),EMBOSS/\1,g' ajax/Makefile.in
@@ -27,21 +27,21 @@
<<
SplitOff10: <<
- Package: %N-ajax4-shlibs
+ Package: %N-ajax5-shlibs
Depends: %N-plplot5-shlibs (>= %v-%r), libpng3-shlibs, libjpeg-shlibs,
gd2-shlibs, libiconv
DocFiles: ChangeLog COPYING README
Files: <<
- lib/EMBOSS/libajax.4*.dylib
- lib/EMBOSS/libajaxg.4*.dylib
+ lib/EMBOSS/libajax.5*.dylib
+ lib/EMBOSS/libajaxg.5*.dylib
<<
Shlibs: <<
- %p/lib/EMBOSS/libajax.4.dylib 5.0.0 %n (>= 4.0.0-1)
- %p/lib/EMBOSS/libajaxg.4.dylib 5.0.0 %n (>= 4.0.0-1)
+ %p/lib/EMBOSS/libajax.5.dylib 5.0.0 %n (>= 5.0.0-1)
+ %p/lib/EMBOSS/libajaxg.5.dylib 5.0.0 %n (>= 5.0.0-1)
<<
<<
SplitOff11: <<
- Package: %N-ajax4-dev
- Depends: %N-ajax4-shlibs (= %v-%r)
+ Package: %N-ajax5-dev
+ Depends: %N-ajax5-shlibs (= %v-%r)
Conflicts: %N-dev
Replaces: %N-dev
DocFiles: ChangeLog COPYING README
@@ -55,22 +55,22 @@
<<
SplitOff20: <<
- Package: %N-nucleus4-shlibs
- Depends: %N-ajax4-shlibs (>= %v-%r)
- Replaces: %N (<< 4.0.0-1)
+ Package: %N-nucleus5-shlibs
+ Depends: %N-ajax5-shlibs (>= %v-%r)
+ Replaces: %N (<< 5.0.0-1)
DocFiles: ChangeLog COPYING README
Files: <<
- lib/EMBOSS/libnucleus.4*.dylib
+ lib/EMBOSS/libnucleus.5*.dylib
<<
Shlibs: <<
- %p/lib/EMBOSS/libnucleus.4.dylib 5.0.0 %n (>= 4.0.0-1)
+ %p/lib/EMBOSS/libnucleus.5.dylib 5.0.0 %n (>= 5.0.0-1)
<<
<<
SplitOff21: <<
- Package: %N-nucleus4-dev
- Depends: %N-nucleus4-shlibs (= %v-%r)
+ Package: %N-nucleus5-dev
+ Depends: %N-nucleus5-shlibs (= %v-%r)
Conflicts: %N-dev
- Replaces: %N-dev, %N (<< 4.0.0-1)
+ Replaces: %N-dev, %N (<< 5.0.0-1)
DocFiles: ChangeLog COPYING README
Files: <<
lib/libnucleus*
@@ -83,28 +83,25 @@
SplitOff30: <<
Package: %N-plplot5-shlibs
Depends: libpng3-shlibs, libjpeg-shlibs, gd2-shlibs, libiconv, x11
- Replaces: %N (<< 4.0.0-1)
+ Replaces: %N (<< 5.0.0-1)
DocFiles: ChangeLog COPYING README
Files: <<
- lib/EMBOSS/libplplot.5*.dylib
+ lib/EMBOSS/libeplplot.3*.dylib
<<
Shlibs: <<
- %p/lib/EMBOSS/libplplot.5.dylib 6.0.0 %n (>= 3.0.0-4)
+ %p/lib/EMBOSS/libeplplot.3.dylib 6.0.0 %n (>= 3.0.0-4)
<<
<<
SplitOff31: <<
Package: %N-plplot5-dev
Depends: %N-plplot5-shlibs (= %v-%r)
Conflicts: %N-dev
- Replaces: %N-dev, %N (<< 4.0.0-1)
+ Replaces: %N-dev, %N (<< 5.0.0-1)
DocFiles: ChangeLog COPYING README
Files: <<
- lib/libplplot*
- lib/EMBOSS/libplplot*
- include/EMBOSS/drivers.h
- include/EMBOSS/metadefs.h
- include/EMBOSS/pdf.h
- include/EMBOSS/pl*.h
+ lib/libeplplot*
+ lib/EMBOSS/libeplplot*
+ include/eplplot/*.h
<<
BuildDependsOnly: True
<<
@@ -115,7 +112,7 @@
<<
DocFiles: <<
- AUTHORS ChangeLog COMPAT COPYING FAQ KNOWN_BUGS LICENSE NEWS README THANKS
+ AUTHORS ChangeLog COMPAT COPYING FAQ INSTALL KNOWN_BUGS LICENSE NEWS ONEWS
PROBLEMS README THANKS
<<
Description: Molecular Biology Open Software Suite
DescDetail: <<
Index: sparky-py.patch
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/sparky-py.patch,v
retrieving revision 1.4.2.1
retrieving revision 1.4.2.2
diff -u -d -r1.4.2.1 -r1.4.2.2
--- sparky-py.patch 19 Jul 2007 22:23:33 -0000 1.4.2.1
+++ sparky-py.patch 24 Jul 2007 17:36:45 -0000 1.4.2.2
@@ -18,7 +18,7 @@
bruk2ucsf$(EXE_SUFFIX) peaks2ucsf$(EXE_SUFFIX) \
matrix2ucsf$(EXE_SUFFIX)
--PYTHON_VERSION = 2.4
+-PYTHON_VERSION = 2.5
+PYTHON_VERSION = 2.X
PYTHON_DIR =
@@ -63,21 +63,21 @@
# If Python is available start Sparky as a Python extension.
# Otherwise the standalone version of Sparky is started.
#
--set PYTHON = $SPARKY_INSTALL/python2.4/bin/python2.4
-+set PYTHON = @FINKPREFIX@/bin/python2.X
- if (! -e $PYTHON) then
-- set PYTHON = python2.4
+-set PYTHON = "$SPARKY_INSTALL/python2.5/bin/python2.5"
++set PYTHON = "@FINKPREFIX@/bin/python2.X"
+ if (! -e "$PYTHON") then
+- set PYTHON = python2.5
+ set PYTHON = python2.X
endif
#
-----------------------------------------------------------------------------
# Where to find Tcl/Tk shared libraries and resources.
#
--setenv TCLTK_LIB $SPARKY_INSTALL/lib
-+setenv TCLTK_LIB @FINKPREFIX@/lib
- setenv LD_LIBRARY_PATH $TCLTK_LIB
- setenv LD_LIBRARYN32_PATH $TCLTK_LIB
- setenv DYLD_LIBRARY_PATH $TCLTK_LIB
+-setenv TCLTK_LIB "$SPARKY_INSTALL/lib"
++setenv TCLTK_LIB "@FINKPREFIX@/lib"
+ setenv LD_LIBRARY_PATH "$TCLTK_LIB"
+ setenv LD_LIBRARYN32_PATH "$TCLTK_LIB"
+ setenv DYLD_LIBRARY_PATH "$TCLTK_LIB"
diff -uNr sparky/c++/Makefile sparky.fink/c++/Makefile
--- sparky/c++/Makefile 2004-02-03 18:56:24.000000000 -0500
+++ sparky.fink/c++/Makefile 2005-12-14 19:40:06.000000000 -0500
@@ -88,8 +88,8 @@
-SPARKY = /usr/local/src/sparky
+SPARKY = @BUILDDIR@
SPARKY_SRC = $(SPARKY)/c++
--PYTHON_VERSION = 2.4
--PY_VER_WIN32 = 24
+-PYTHON_VERSION = 2.5
+-PY_VER_WIN32 = 25
-PYTHON_PREFIX = /usr/local
+SPARKY_INSTALL = @FINKDESTDIR@@FINKPREFIX@/lib/sparky-py2X
+PYTHON_VERSION = 2.X
@@ -186,7 +186,7 @@
-SPARKY_INSTALL = /usr/local/sparky
-PYTHON_PREFIX = /usr/local
--PYTHON_VERSION = 2.4
+-PYTHON_VERSION = 2.5
+SPARKY_INSTALL = @FINKDESTDIR@@FINKPREFIX@/lib/sparky-py2X
+PYTHON_PREFIX = @FINKPREFIX@
+PYTHON_VERSION = 2.X
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