Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods In directory sc8-pr-cvs17:/tmp/cvs-serv9768
Modified Files: bio-emboss-pm.info Added Files: bio-emboss-pm.patch Log Message: new upstream, compatible with emboss 5.0.0 --- NEW FILE: bio-emboss-pm.patch --- diff -Naur Bio-Emboss-5.0.0.1/Makefile.PL Bio-Emboss-5.0.0.1-patched/Makefile.PL --- Bio-Emboss-5.0.0.1/Makefile.PL 2007-08-08 10:52:08.000000000 -0400 +++ Bio-Emboss-5.0.0.1-patched/Makefile.PL 2007-09-20 18:23:42.000000000 -0400 @@ -11,7 +11,7 @@ # (if you did no "make install" of EMBOSS, # put here the path to the source code) -$EMB_ROOT = ""; +$EMB_ROOT = "@PREFIX@"; #$EMB_ROOT = "/usr/local"; @@ -19,7 +19,7 @@ # XLIB and LIBS from the EMBOSS Makefile # (<emboss-build-dir>/emboss/Makefile) -$EMB_EXT_LIBS = ""; +$EMB_EXT_LIBS = "@PREFIX@/lib"; #$EMB_EXT_LIBS = "-L/usr/X11R6/lib -lX11 -lm -lgd -lpng -lz"; #$EMB_EXT_LIBS = "-L/usr/openwin/lib -lX11 -lsocket -lm -lnsl -lgd -lpng -lz"; @@ -89,7 +89,8 @@ } if (-d "$EMB_ROOT/include") { - $EMB_INC = "-I$EMB_ROOT/include"; +# $EMB_INC = "-I$EMB_ROOT/include"; + $EMB_INC = "[EMAIL PROTECTED]@/include/EMBOSS [EMAIL PROTECTED]@/include/eplplot"; } else { $EMB_INC = join " ", map { "-I$EMB_ROOT/$_" } grep { -d "$EMB_ROOT/$_"} @emb_lib_dirs; } @@ -101,7 +102,7 @@ # --- look for EMBOSS in $EMB_ROOT and $EMB_SRC_ROOT # (disable if you change $EMB_LIBS or $EMB_INC manually) # ---- check function needs update -$check_installation = 0; +#$check_installation = 0; # --- trying to get the EMBOSS version from the application 'embossversion' Index: bio-emboss-pm.info =================================================================== RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/bio-emboss-pm.info,v retrieving revision 1.7 retrieving revision 1.8 diff -u -d -r1.7 -r1.8 --- bio-emboss-pm.info 16 Jun 2007 22:45:02 -0000 1.7 +++ bio-emboss-pm.info 21 Sep 2007 02:58:56 -0000 1.8 @@ -1,39 +1,25 @@ Info2: << Package: bio-emboss-pm%type_pkg[perl] -Version: 4.1.0 +Version: 5.0.0.1 Revision: 1 Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc Distribution: (%type_pkg[perl] = 581) 10.3, (%type_pkg[perl] = 581) 10.4, (%type_pkg[perl] = 584) 10.3, (%type_pkg[perl] = 584) 10.4 Type: perl (5.8.1 5.8.6) Source: http://www.cpan.org/modules/by-module/Bio/Bio-Emboss-%v.tar.gz -Source-MD5: 461eb81fbc678bf5ae247d10ba53f964 - -BuildDepends: emboss-ajax4-dev (>=4.1.0), emboss-nucleus4-dev (>=4.1.0), emboss-plplot5-dev (>=4.1.0) -Depends: emboss-ajax4-shlibs (>=4.1.0), emboss-nucleus4-shlibs (>=4.1.0), emboss-plplot5-shlibs (>=4.1.0), libwww-pm%type_pkg[perl], io-string-pm - -UpdatePOD: true -PatchScript: << - perl -pi.bak -e 's|\$EMB_ROOT = \"\"|\$EMB_ROOT = \"%p\"|' Makefile.PL; - perl -pi.bak -e 's|\$check_installation = 0|\#\$check_installation = 0|' Makefile.PL; - perl -pi.bak -e 's|test "\$EMB_SRC_ROOT" != "" &&||' Makefile.PL; - - perl -pi.bak -e 's|ajhist.h|%p/include/EMBOSS/ajhist.h|' Emboss_hist.xs; - perl -pi.bak -e 's|ajlist.h|%p/include/EMBOSS/ajlist.h|' Emboss_list.xs; - perl -pi.bak -e 's|embest.h|%p/include/EMBOSS/embest.h|' Emboss_embest.xs; +Source-MD5: 02c24eedae3ec9765baa3c669ecca533 - perl -pi.bak -e 's|ajhist.h|%p/include/EMBOSS/ajhist.h|' deprecated_Emboss_hist.xs; +BuildDepends: emboss-ajax5-dev (>=5.0.0-3), emboss-nucleus5-dev (>=5.0.0-3), emboss-plplot5-dev (>=5.0.0-3) +Depends: emboss (>=5.0.0-3), emboss-ajax5-shlibs (>=5.0.0-3), emboss-nucleus5-shlibs (>=5.0.0-3), emboss-plplot5-shlibs (>=5.0.0-3), libwww-pm%type_pkg[perl], io-string-pm - perl -pi.bak -e 's|emboss.h|%p/include/EMBOSS/emboss.h|' emboss_perl.h; -<< +PatchScript: sed -e 's|@PREFIX@|%p|g' < %a/%{ni}.patch | patch -p1 InstallScript: << %{default_script} - make epods; - /bin/mv %i/share/man %i/lib/perl5/%type_raw[perl] << +UpdatePOD: true DocFiles: README MANIFEST Changes Description: Perl interface to EMBOSS DescDetail: << ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2005. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Fink-commits mailing list Fink-commits@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-commits