Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs17:/tmp/cvs-serv20023/main/finkinfo/sci
Modified Files:
Tag: pangocairo-branch
biggles-py.info emboss.info emboss.patch geda-gattrib.info
gildas.info lpsolve-octave.info octave.info octave.patch
pyfits-py.info qprop.info scientificpython-py.info
scientificpython-py.patch scipy-py.info scipy-py.patch
yorick.info zimpl.info
Log Message:
mege from head
Index: scipy-py.patch
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/scipy-py.patch,v
retrieving revision 1.1.2.3
retrieving revision 1.1.2.4
diff -u -d -r1.1.2.3 -r1.1.2.4
--- scipy-py.patch 18 Sep 2007 00:27:40 -0000 1.1.2.3
+++ scipy-py.patch 28 Sep 2007 16:34:31 -0000 1.1.2.4
@@ -1,6 +1,20 @@
---- scipy/Lib/sandbox/setup.py.orig 2006-09-08 10:34:46.000000000 -0600
-+++ scipy/Lib/sandbox/setup.py 2006-09-08 10:36:48.000000000 -0600
-@@ -47,40 +47,40 @@
+--- scipy/scipy/sandbox/setup.py.orig 2007-09-22 07:45:51.000000000 -0600
++++ scipy/scipy/sandbox/setup.py 2007-09-22 07:45:57.000000000 -0600
+@@ -34,58 +34,58 @@
+ # check it in and screw other people up :-)
+
+ # An example package:
+- #config.add_subpackage('exmplpackage')
++ config.add_subpackage('exmplpackage')
+
+ # Monte Carlo package
+ #config.add_subpackage('montecarlo')
+
+ # Robert Kern's corner:
+- #config.add_subpackage('rkern')
++ config.add_subpackage('rkern')
+
+ # ODRPACK
#config.add_subpackage('odr')
# Delaunay triangulation and Natural Neighbor interpolation
@@ -17,11 +31,11 @@
# Statistical models
- #config.add_subpackage('models')
-+ #config.add_subpackage('models')
++ config.add_subpackage('models')
# Adaptation of Scientific.IO (2.4.9) to use NumPy
- #config.add_subpackage('netcdf')
-+ config.add_subpackage('netcdf')
++ #config.add_subpackage('netcdf')
# Finite Difference Formulae package
- #config.add_subpackage('fdfpack')
@@ -33,7 +47,7 @@
# Interpolating between sparse samples
- #config.add_subpackage('buildgrid')
-+ #config.add_subpackage('buildgrid')
++ config.add_subpackage('buildgrid')
# Package for Support Vector Machine
- #config.add_subpackage('svm')
@@ -45,30 +59,19 @@
# David Cournapeau's corner: autocorrelation, lpc, lpc residual
- #config.add_subpackage('cdavid')
-+ #config.add_subpackage('cdavid')
++ config.add_subpackage('cdavid')
# New spline package (based on scipy.interpolate)
- #config.add_subpackage('spline')
+ config.add_subpackage('spline')
+
+ # Radial basis functions package
+- #config.add_subpackage('rbf')
++ config.add_subpackage('rbf')
- return config
+ # Multigrid Solvers
+- #config.add_subpackage('multigrid')
++ config.add_subpackage('multigrid')
---- scipy/Lib/fftpack/setup.py.old 2007-08-23 14:40:09.000000000 -0400
-+++ scipy/Lib/fftpack/setup.py 2007-08-23 14:40:36.000000000 -0400
-@@ -30,7 +30,7 @@
- config.add_extension('_fftpack',
- sources=sources,
- libraries=['dfftpack'],
-- extra_info = fft_opt_info
-+ extra_info = [fft_opt_info, djbfft_info],
- )
- config.add_extension('convolve',
---- scipy/Lib/signal/filter_design.py.old 2007-08-20 22:43:50.000000000
-0400
-+++ scipy/Lib/signal/filter_design.py 2007-08-23 15:10:19.000000000 -0400
-@@ -1539,4 +1539,4 @@
- alpha = N//2
- m = numpy.arange(0,N)
- h = win*special.sinc(cutoff*(m-alpha))
-- return h / sum(h,axis=0)
-+ return h / numpy.sum(h,axis=0)
+ return config
Index: gildas.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/gildas.info,v
retrieving revision 1.1.2.2
retrieving revision 1.1.2.3
diff -u -d -r1.1.2.2 -r1.1.2.3
--- gildas.info 4 Aug 2007 03:33:12 -0000 1.1.2.2
+++ gildas.info 28 Sep 2007 16:34:30 -0000 1.1.2.3
@@ -1,11 +1,11 @@
Package: gildas
-Version: 200707
+Version: 200709
Revision: 1
Description: Radioastronomy data analysis software
License: OSI-Approved
Maintainer: Sebastien Maret <[EMAIL PROTECTED]>
-Source: http://www.iram.fr/~gildas/dist/gildas-src-jul07a.tar.gz
-Source-MD5: d98f4f6c0a8596b73852268f54946bfd
+Source: http://www.iram.fr/~gildas/dist/gildas-src-sep07a.tar.gz
+Source-MD5: 1d6a272d5dc633a32f031f2b0df01bad
Depends: <<
fftw3-shlibs, libpng3-shlibs, openmotif3-shlibs, x11
<<
Index: scientificpython-py.patch
===================================================================
RCS file:
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/scientificpython-py.patch,v
retrieving revision 1.1
retrieving revision 1.1.2.1
diff -u -d -r1.1 -r1.1.2.1
--- scientificpython-py.patch 20 Jan 2006 20:30:40 -0000 1.1
+++ scientificpython-py.patch 28 Sep 2007 16:34:31 -0000 1.1.2.1
@@ -1,20 +1,20 @@
---- ScientificPython/setup.py.orig Sat Feb 21 16:47:37 2004
-+++ ScientificPython/setup.py Sat Feb 21 16:48:34 2004
-@@ -32,7 +32,7 @@
- ['Src/Scientific_netcdf.c'],
- include_dirs=['Include', netcdf_include],
+--- ScientificPython/setup.py.orig 2007-09-22 07:31:15.000000000 -0600
++++ ScientificPython/setup.py 2007-09-22 07:32:39.000000000 -0600
+@@ -61,7 +61,7 @@
+ include_dirs=['Include', netcdf_include]
+ + arrayobject_h_include,
library_dirs=[netcdf_lib],
-- libraries = ['netcdf'])]
-+ libraries = ['nc-dap','dap'])]
-
- packages = ['Scientific', 'Scientific.Functions',
- 'Scientific.Geometry', 'Scientific.IO',
---- ScientificPython/Src/Scientific_netcdf.c.orig Fri Sep 16 13:08:17 2005
-+++ ScientificPython/Src/Scientific_netcdf.c Fri Sep 16 13:08:54 2005
-@@ -11,7 +11,7 @@
+- libraries = ['netcdf'],
++ libraries = ['nc-dap','dap'],
+ extra_compile_args=extra_compile_args)]
- #include "Python.h"
+ cmdclass = {}
+--- ScientificPython/Src/Scientific_netcdf.c.orig 2007-09-22
07:33:10.000000000 -0600
++++ ScientificPython/Src/Scientific_netcdf.c 2007-09-22 07:33:23.000000000
-0600
+@@ -19,7 +19,7 @@
#include "Numeric/arrayobject.h"
+ #endif
+ #endif
-#include "netcdf.h"
+#include "libnc-dap/netcdf.h"
Index: yorick.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/yorick.info,v
retrieving revision 1.1
retrieving revision 1.1.2.1
diff -u -d -r1.1 -r1.1.2.1
--- yorick.info 20 Jan 2006 20:30:41 -0000 1.1
+++ yorick.info 28 Sep 2007 16:34:31 -0000 1.1.2.1
@@ -1,5 +1,5 @@
Package: yorick
-Version: 2.1.01
+Version: 2.1.04
Revision: 1
Description: Interpreted language and scientific graphics
License: BSD
@@ -11,7 +11,7 @@
Replaces: yorick
Source: mirror:sourceforge:yorick/yorick-%v.tgz
SourceDirectory: yorick-2.1
-Source-MD5: 9d9e2a223bc03b420ccc4a00b5a7fc90
+Source-MD5: fb434855c707993fac932188ca518589
SetCFLAGS: -O2
CompileScript: <<
make Y_HOME=relocatable ysite
Index: scientificpython-py.info
===================================================================
RCS file:
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/scientificpython-py.info,v
retrieving revision 1.6.2.1
retrieving revision 1.6.2.2
diff -u -d -r1.6.2.1 -r1.6.2.2
--- scientificpython-py.info 19 Jun 2007 21:17:54 -0000 1.6.2.1
+++ scientificpython-py.info 28 Sep 2007 16:34:31 -0000 1.6.2.2
@@ -1,22 +1,22 @@
Info2: <<
Package: scientificpython-py%type_pkg[python]
-Version: 2.4.11
+Version: 2.7.6
Revision: 2
Distribution: (%type_pkg[python] = 23) 10.3, (%type_pkg[python] = 23) 10.4
Type: python (2.3 2.4 2.5)
Maintainer: Jeffrey Whitaker <[EMAIL PROTECTED]>
-Depends: python%type_pkg[python], numeric-py%type_pkg[python],
libnc-dap3-shlibs (>= 3.5.2-1001), libdap3-shlibs (>= 3.5.2-1001)
-BuildDepends: libnc-dap3 (>= 3.5.2-1001), libdap3 (>= 3.5.2-1001)
+Depends: python%type_pkg[python], scipy-core-py%type_pkg[python],
libnc-dap3-shlibs (>= 3.5.2-1001), libdap6-shlibs
+BuildDepends: libnc-dap3 (>= 3.7.0-1), libdap6
Replaces: scientificpython
-Source: http://sourcesup.cru.fr/frs/download.php/686/scientificpython-%v.tar.gz
-Source-MD5: 387878545731da56e5a798de04588439
+Source:
http://sourcesup.cru.fr/frs/download.php/1392/scientificpython-%v.tar.gz
+Source-MD5: 1e118671f45b0d19927b792fe56c07e8
SourceDirectory: ScientificPython-%v
Patch: %{ni}.patch
CompileScript: <<
#!/bin/sh -ev
export NETCDF_PREFIX=%p
- %p/bin/python%type_raw[python] setup.py build
+ %p/bin/python%type_raw[python] setup.py build --numpy
<<
InstallScript: <<
#!/bin/sh -ev
@@ -25,21 +25,22 @@
mkdir -p %i/share/doc/%n/HTML
mkdir -p %i/share/doc/%n/PDF
mv %i/bin/bsp_virtual %i/bin/bsp_virtual%type_raw[python]
+ mv %i/bin/task_manager %i/bin/task_manager%type_raw[python]
ln -s %p/bin/bsp_virtual%type_raw[python] %i/bin/bsp_virtual
+ ln -s %p/bin/task_manager%type_raw[python] %i/bin/task_manager
cp -R Examples %i/share/doc/%n
- cp -R Doc/HTML %i/share/doc/%n
- cp -R Doc/PDF %i/share/doc/%n
+ cp -R Doc/* %i/share/doc/%n
<<
SplitOff: <<
Package: scientificpython-py%type_pkg[python]-bin
Conflicts: scientificpython-py22-bin, scientificpython-py23-bin,
scientificpython-py24-bin
Replaces: scientificpython-py22-bin, scientificpython-py23-bin,
scientificpython-py24-bin
Depends: scientificpython-py%type_pkg[python] (= %v-%r)
- Files: bin/bsp_virtual
+ Files: bin/bsp_virtual bin/task_manager
DocFiles: README LICENSE
<<
License: OSI-Approved
-DocFiles: README LICENSE
+DocFiles: README LICENSE
Description: Python modules for scientific computing
DescDetail: <<
In this collection you will find modules that
Index: zimpl.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/zimpl.info,v
retrieving revision 1.2
retrieving revision 1.2.2.1
diff -u -d -r1.2 -r1.2.2.1
--- zimpl.info 27 Sep 2006 00:29:19 -0000 1.2
+++ zimpl.info 28 Sep 2007 16:34:31 -0000 1.2.2.1
@@ -1,5 +1,5 @@
Package: zimpl
-Version: 2.05
+Version: 2.07
Revision: 1
Description: Modeling language for optimization problems
License: GPL
@@ -10,15 +10,14 @@
Depends: gmp-shlibs (>= 4.1.2)
# Unpack Phase:
-Source: http://www.zib.de/koch/zimpl/download/%n-%v.tgz
-Source-MD5: 20cef862b75e567412b34b6dc484d8c0
-SourceDirectory: %n
+Source: http://zimpl.zib.de/download/%n-%v.tgz
+Source-MD5: bfc602cd0e9d8d2365457b3933f49ef1
+#SourceDirectory: %n
# Patch Phase
PatchScript: <<
echo "CPPFLAGS += -I%p/include" > make/local/make.`hostname`
echo "LDFLAGS += -L%p/lib" >> make/local/make.`hostname`
- ln -s make.darwin.ppc.gnu.opt make/make.darwin.x86.gnu.opt
<<
# Compile Phase:
Index: geda-gattrib.info
===================================================================
RCS file:
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/geda-gattrib.info,v
retrieving revision 1.8.2.25
retrieving revision 1.8.2.26
diff -u -d -r1.8.2.25 -r1.8.2.26
--- geda-gattrib.info 28 Sep 2007 16:15:26 -0000 1.8.2.25
+++ geda-gattrib.info 28 Sep 2007 16:34:30 -0000 1.8.2.26
@@ -74,8 +74,11 @@
./configure %c
make
<<
-
-InstallScript: make -j1 install DESTDIR=%d
+InstallScript: <<
+ make -j1 install DESTDIR=%d
+ mkdir -p %d/%p/share/gEDA
+ mv %d/%p/etc/gEDA/gattrib-menus.xml %d/%p/share/gEDA
+<<
DocFiles: <<
AUTHORS BUGS COPYING ChangeLog NEWS NOTES README ToDos
@@ -107,7 +110,7 @@
<<
DescPackaging: <<
-$LastChangedRevision: 423 $ in my local SVN repository.
+$LastChangedRevision: 428 $ in my local SVN repository.
<<
License: GPL
Index: biggles-py.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/biggles-py.info,v
retrieving revision 1.4.2.1
retrieving revision 1.4.2.2
diff -u -d -r1.4.2.1 -r1.4.2.2
--- biggles-py.info 19 Jun 2007 21:17:51 -0000 1.4.2.1
+++ biggles-py.info 28 Sep 2007 16:34:30 -0000 1.4.2.2
@@ -1,14 +1,14 @@
Info2: <<
Package: biggles-py%type_pkg[python]
-Version: 1.6.4
-Revision: 1002
+Version: 1.6.5
+Revision: 1001
Distribution: (%type_pkg[python] = 23) 10.3, (%type_pkg[python] = 23) 10.4
Type: python(2.3 2.4 2.5)
Maintainer: Sebastien Maret <[EMAIL PROTECTED]>
BuildDepends: plotutils-dev (>= 2.4.1-1007)
-Depends: python%type_pkg[python], numeric-py%type_pkg[python],
plotutils-shlibs (>= 2.4.1-1007)
+Depends: python%type_pkg[python], numpy-py%type_pkg[python], plotutils-shlibs
(>= 2.4.1-1007)
Source: mirror:sourceforge:biggles/python2-biggles-%v.tar.gz
-Source-MD5: e07bc9e22d830ada274ea71bc6d12556
+Source-MD5: be1ba7a98cd58ce875e181bd60930b63
CompileScript: python%type_raw[python] setup.py build
InstallScript: <<
python%type_raw[python] setup.py install --root=%d
Index: octave.patch
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/octave.patch,v
retrieving revision 1.4.2.2
retrieving revision 1.4.2.3
diff -u -d -r1.4.2.2 -r1.4.2.3
--- octave.patch 29 May 2007 20:21:43 -0000 1.4.2.2
+++ octave.patch 28 Sep 2007 16:34:30 -0000 1.4.2.3
@@ -1,6 +1,6 @@
---- octave/configure.orig 2006-12-22 07:35:54.000000000 -0700
-+++ octave/configure 2006-12-22 07:36:59.000000000 -0700
-@@ -12693,16 +12693,13 @@
+--- octave/configure.orig 2007-09-23 13:52:42.000000000 -0600
++++ octave/configure 2007-09-23 13:53:32.000000000 -0600
+@@ -12961,16 +12961,13 @@
LIBS="$save_LIBS"
fi
@@ -23,7 +23,7 @@
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
-@@ -12715,7 +12712,7 @@
+@@ -12983,7 +12980,7 @@
#ifdef __cplusplus
extern "C"
#endif
@@ -32,7 +32,7 @@
#ifdef F77_DUMMY_MAIN
# ifdef __cplusplus
-@@ -12727,7 +12724,7 @@
+@@ -12995,7 +12992,7 @@
int
main ()
{
@@ -41,7 +41,7 @@
;
return 0;
}
-@@ -12750,29 +12747,31 @@
+@@ -13018,29 +13015,31 @@
test ! -s conftest.err
} && test -s conftest$ac_exeext &&
$as_test_x conftest$ac_exeext; then
@@ -83,7 +83,7 @@
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
-@@ -12837,13 +12836,14 @@
+@@ -13105,13 +13104,14 @@
{ echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }
if test `eval echo '${'$as_ac_Lib'}'` = yes; then
@@ -102,7 +102,7 @@
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
-@@ -12857,7 +12857,7 @@
+@@ -13125,7 +13125,7 @@
#ifdef __cplusplus
extern "C"
#endif
@@ -111,7 +111,7 @@
#ifdef F77_DUMMY_MAIN
# ifdef __cplusplus
-@@ -12869,7 +12869,7 @@
+@@ -13137,7 +13137,7 @@
int
main ()
{
@@ -120,7 +120,7 @@
;
return 0;
}
-@@ -12892,38 +12892,31 @@
+@@ -13160,38 +13160,31 @@
test ! -s conftest.err
} && test -s conftest$ac_exeext &&
$as_test_x conftest$ac_exeext; then
@@ -174,7 +174,7 @@
/* confdefs.h. */
_ACEOF
cat confdefs.h >>conftest.$ac_ext
-@@ -12971,31 +12964,40 @@
+@@ -13239,31 +13232,40 @@
test ! -s conftest.err
} && test -s conftest$ac_exeext &&
$as_test_x conftest$ac_exeext; then
@@ -226,7 +226,7 @@
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
-@@ -13009,7 +13011,7 @@
+@@ -13277,7 +13279,7 @@
#ifdef __cplusplus
extern "C"
#endif
@@ -235,7 +235,7 @@
#ifdef F77_DUMMY_MAIN
# ifdef __cplusplus
-@@ -13021,7 +13023,7 @@
+@@ -13289,7 +13291,7 @@
int
main ()
{
@@ -244,7 +244,7 @@
;
return 0;
}
-@@ -13044,30 +13046,29 @@
+@@ -13312,30 +13314,29 @@
test ! -s conftest.err
} && test -s conftest$ac_exeext &&
$as_test_x conftest$ac_exeext; then
@@ -284,7 +284,7 @@
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
-@@ -13081,7 +13082,7 @@
+@@ -13349,7 +13350,7 @@
#ifdef __cplusplus
extern "C"
#endif
@@ -293,7 +293,7 @@
#ifdef F77_DUMMY_MAIN
# ifdef __cplusplus
-@@ -13093,7 +13094,7 @@
+@@ -13361,7 +13362,7 @@
int
main ()
{
@@ -302,7 +302,7 @@
;
return 0;
}
-@@ -13132,14 +13133,13 @@
+@@ -13400,14 +13401,13 @@
{ echo "$as_me:$LINENO: result: $ac_res" >&5
echo "${ECHO_T}$ac_res" >&6; }
if test `eval echo '${'$as_ac_Lib'}'` = yes; then
@@ -321,7 +321,7 @@
cat >conftest.$ac_ext <<_ACEOF
/* confdefs.h. */
_ACEOF
-@@ -13153,7 +13153,7 @@
+@@ -13421,7 +13421,7 @@
#ifdef __cplusplus
extern "C"
#endif
@@ -330,7 +330,7 @@
#ifdef F77_DUMMY_MAIN
# ifdef __cplusplus
-@@ -13165,7 +13165,7 @@
+@@ -13433,7 +13433,7 @@
int
main ()
{
@@ -339,7 +339,7 @@
;
return 0;
}
-@@ -13188,23 +13188,23 @@
+@@ -13456,23 +13456,23 @@
test ! -s conftest.err
} && test -s conftest$ac_exeext &&
$as_test_x conftest$ac_exeext; then
@@ -370,3 +370,11 @@
fi
fi
+@@ -13481,6 +13481,7 @@
+
+ fi
+
++
+ # BLAS in Alpha CXML library?
+ if test $acx_blas_ok = no; then
+ as_ac_Lib=`echo "ac_cv_lib_cxml_$sgemm" | $as_tr_sh`
Index: scipy-py.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/scipy-py.info,v
retrieving revision 1.11.2.3
retrieving revision 1.11.2.4
diff -u -d -r1.11.2.3 -r1.11.2.4
--- scipy-py.info 18 Sep 2007 00:27:40 -0000 1.11.2.3
+++ scipy-py.info 28 Sep 2007 16:34:31 -0000 1.11.2.4
@@ -1,16 +1,16 @@
Info2: <<
Package: scipy-py%type_pkg[python]
-Version: 0.5.2.1
+Version: 0.6.0
Epoch: 1
Revision: 2
Distribution: (%type_pkg[python] = 23) 10.3, (%type_pkg[python] = 23) 10.4
Maintainer: Jeffrey Whitaker <[EMAIL PROTECTED]>
Type: python (2.3 2.4 2.5)
-Depends: scipy-core-py%type_pkg[python] (>= 1.0.3-1), python%type_pkg[python]
| python%type_pkg[python]-nox, fftw3-shlibs, netcdf-shlibs
-BuildDepends: fftw3, g95 (>= 0.90-1), netcdf, djbfft (>= 0.76-3)
+Depends: scipy-core-py%type_pkg[python] (>= 1.0.3-1), python%type_pkg[python]
| python%type_pkg[python]-nox, fftw3-shlibs
+BuildDepends: fftw3, g95 (>= 0.90-1), djbfft (>= 0.76-3)
Source: mirror:sourceforge:scipy/scipy-%v.tar.gz
-Source-MD5: 8d9083b94b0bbbc96a96099f68e62526
+Source-MD5: 417adf3bfe03f4c23c9fb265018e545c
Patch: %{ni}.patch
CompileScript: <<
%p/bin/python%type_raw[python] setup.py config_fc --fcompiler=g95 build
Index: octave.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/octave.info,v
retrieving revision 1.13.2.5
retrieving revision 1.13.2.6
diff -u -d -r1.13.2.5 -r1.13.2.6
--- octave.info 18 Sep 2007 00:27:39 -0000 1.13.2.5
+++ octave.info 28 Sep 2007 16:34:30 -0000 1.13.2.6
@@ -1,10 +1,10 @@
Package: octave
-Version: 2.9.13
+Version: 2.9.14
Revision: 1
Maintainer: Jeffrey Whitaker <[EMAIL PROTECTED]>
BuildDependsOnly: false
Source: ftp://ftp.octave.org/pub/octave/bleeding-edge/octave-%v.tar.gz
-Source-MD5: 493e9dfc66bfda1ea270bf1dfc8ec6cc
+Source-MD5: b3253a5e21f114a96183b4fef31a5a41
BuildDepends: glpk-dev, hdf5, readline5, texinfo, g95 (>= 0.50-20060321),
libncurses5, fftw3, texi2html, tetex-base, libcurl4, sed, pcre
Depends: glpk-shlibs, gnuplot | gnuplot-nox, readline5-shlibs, fftw3-shlibs,
hdf5-shlibs, ncurses, libncurses5-shlibs, aquaterm, libcurl4-shlibs, pcre-shlibs
BuildConflicts: coot-dev, broken-gcc, lammpi-dev
Index: pyfits-py.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pyfits-py.info,v
retrieving revision 1.2.2.1
retrieving revision 1.2.2.2
diff -u -d -r1.2.2.1 -r1.2.2.2
--- pyfits-py.info 19 Jun 2007 21:17:53 -0000 1.2.2.1
+++ pyfits-py.info 28 Sep 2007 16:34:30 -0000 1.2.2.2
@@ -1,6 +1,6 @@
Info2: <<
Package: pyfits-py%type_pkg[python]
-Version: 1.0.1
+Version: 1.1
Revision: 1
Distribution: (%type_pkg[python] = 23) 10.3, (%type_pkg[python] = 23) 10.4
Type: python(2.3 2.4 2.5)
@@ -9,10 +9,11 @@
Maintainer: Sebastien Maret <[EMAIL PROTECTED]>
Depends: <<
python%type_pkg[python] | python%type_pkg[python]-nox,
- numeric-py%type_pkg[python]
+ numpy-py%type_pkg[python]
<<
-Source: ftp://ra.stsci.edu/pub/pyfits/pyfits-%v.tar.gz
-Source-MD5: 7cab1ef229b47760f91437b427e43819
+Source:
http://www.stsci.edu/resources/software_hardware/pyfits/pyfits-%v.tar.gz
+Source-MD5: c609558432e2b61bc91cf511e8b62fd9
+SourceDirectory: pyfits
CompileScript: <<
python%type_raw[python] setup.py build
<<
Index: emboss.patch
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.patch,v
retrieving revision 1.5.2.1
retrieving revision 1.5.2.2
diff -u -d -r1.5.2.1 -r1.5.2.2
--- emboss.patch 11 Apr 2007 15:25:00 -0000 1.5.2.1
+++ emboss.patch 28 Sep 2007 16:34:30 -0000 1.5.2.2
@@ -1,24 +1,21 @@
-diff -Naur EMBOSS-4.1.0/ajax/ajjava.c EMBOSS-4.1.0-patched/ajax/ajjava.c
---- EMBOSS-4.1.0/ajax/ajjava.c 2006-06-20 05:12:35.000000000 -0400
-+++ EMBOSS-4.1.0-patched/ajax/ajjava.c 2007-04-06 12:09:04.000000000 -0400
-@@ -89,7 +89,7 @@
- #define _XOPEN_SOURCE
- #endif
-
--#if !defined(__ppc__) && !defined(__FreeBSD__)
-+#if !defined(__APPLE__) && !defined(__FreeBSD__)
- #include <crypt.h>
- #endif
-
-diff -Naur EMBOSS-4.1.0/emboss/jembossctl.c
EMBOSS-4.1.0-patched/emboss/jembossctl.c
---- EMBOSS-4.1.0/emboss/jembossctl.c 2007-01-16 07:11:18.000000000 -0500
-+++ EMBOSS-4.1.0-patched/emboss/jembossctl.c 2007-04-06 12:09:29.000000000
-0400
-@@ -115,7 +115,7 @@
- #define _XOPEN_SOURCE
- #endif
+--- EMBOSS-5.0.0/emboss/psiphi.c 2007-07-06 08:15:29.000000000 -0400
++++ EMBOSS-5.0.0-patch/emboss/psiphi.c 2007-07-27 05:28:27.000000000 -0400
+@@ -160,7 +160,7 @@
+ finishres = ajAcdGetInt("finishresiduenumber");
--#if !defined(__ppc__) && !defined(__FreeBSD__)
-+#if !defined(__APPLE__) && !defined(__FreeBSD__)
- #include <crypt.h>
- #endif
+ /* reserve memory for and read in structure */
+- /* JISON */ pdb = ajPdbReadoldNew(pdbfile);
++ /* JISON */ pdb = ajPdbReadNew(pdbfile,0);
+
+ /* check and set number of chain to be analysed */
+ highest = pdb->Nchn;
+@@ -440,6 +440,9 @@
+ ajint lowestres = 0;
+ AjPAtom inlist = NULL;
++
++ if(!ajListGetLength(pdb->Chains[myindex]->Atoms))
++ ajFatal("Chain %d has no atoms",myindex+1);
+
+ /* read first atom in list into memory, but keep it on list */
+ ajListPeek(pdb->Chains[myindex]->Atoms,
Index: emboss.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/emboss.info,v
retrieving revision 1.7.2.4
retrieving revision 1.7.2.5
diff -u -d -r1.7.2.4 -r1.7.2.5
--- emboss.info 18 Sep 2007 00:27:38 -0000 1.7.2.4
+++ emboss.info 28 Sep 2007 16:34:30 -0000 1.7.2.5
@@ -1,6 +1,6 @@
Package: emboss
Version: 5.0.0
-Revision: 2
+Revision: 3
Depends: %N-ajax5-shlibs (>= %v-%r), %N-nucleus5-shlibs (>= %v-%r),
%N-plplot5-shlibs (>= %v-%r), x11, libpng3-shlibs, libjpeg-shlibs, gd2-shlibs,
system-java14
BuildDepends: libpng3, libjpeg, gd2, libiconv-dev, x11-dev, system-java14-dev
#Replaces: emboss (<< 5.0.0)
@@ -10,13 +10,7 @@
<<
Source-MD5: be4c895220ad34afd65d450ba7d8e34b
SetCPPFLAGS: -Dstat64=stat
-#Patch: %n.patch
-PatchScript: <<
- perl -pi -e 's,([<"])(pcre)(.*.h[>"]),\1EMBOSS/\2\3,' ajax/*
- perl -pi -e 's,(pcre\S*\.h),EMBOSS/\1,g' ajax/Makefile.in
- mkdir ajax/EMBOSS
- mv ajax/pcre*.h ajax/EMBOSS
-<<
+Patch: %n.patch
ConfigureParams:
--with-java=/System/Library/Frameworks/JavaVM.framework/Versions/1.4.2/Home
--with-javaos=/System/Library/Frameworks/JavaVM.framework/Versions/1.4.2/Home/include
--disable-dependency-tracking --libdir=%p/lib/EMBOSS
Installscript: <<
make install DESTDIR=%d
Index: lpsolve-octave.info
===================================================================
RCS file:
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/lpsolve-octave.info,v
retrieving revision 1.1.2.3
retrieving revision 1.1.2.4
diff -u -d -r1.1.2.3 -r1.1.2.4
--- lpsolve-octave.info 13 Feb 2007 19:58:10 -0000 1.1.2.3
+++ lpsolve-octave.info 28 Sep 2007 16:34:30 -0000 1.1.2.4
@@ -1,9 +1,9 @@
Info2: <<
Package: lpsolve-octave
Version: 5.5.0.10
-Revision: 1
+Revision: 2
## It is probably prudent to rev-up and change the next line whenever octave
or lpsolve go to a new version
-Type: octave (2.1.73), maj (5.5)
+Type: octave (2.9.14), maj (5.5)
BuildDepends: fftw3, hdf5, libncurses5, lpsolve%type_raw[maj]-dev (>= %v-1),
octave (>= %type_raw[octave]-1), readline5
Depends: fftw3-shlibs, hdf5-shlibs, libncurses5-shlibs,
lpsolve%type_raw[maj]-shlibs (>= %type_raw[maj].0.0-1), octave (>=
%type_raw[octave]-1), readline5-shlibs
Index: qprop.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/qprop.info,v
retrieving revision 1.2.2.2
retrieving revision 1.2.2.3
diff -u -d -r1.2.2.2 -r1.2.2.3
--- qprop.info 13 Feb 2007 19:58:11 -0000 1.2.2.2
+++ qprop.info 28 Sep 2007 16:34:31 -0000 1.2.2.3
@@ -1,12 +1,12 @@
Package: qprop
-Version: 1.16
+Version: 1.21
Revision: 1
#Architecture: powerpc
License: GPL
Depends:
BuildDepends: g95
Source: http://web.mit.edu/drela/Public/web/qprop/qprop%v.tar.gz
-Source-MD5: 28219cc9b811e714c3b24c67b3936ff4
+Source-MD5: 1398ef8c670828138bdb4807037fe433
SourceDirectory: Qprop
PatchScript: patch -p1 < %a/%n.patch
CompileScript: <<
@@ -26,7 +26,7 @@
/bin/cp -pr * %i/share/doc/qprop/runs/
head -n14 ../src/qprop.f | tail -n11 > %i/share/doc/qprop/License
<<
-DocFiles: qprop_doc.txt qmil_doc.txt prop_measure.pdf qprop_theory.pdf
version_notes.txt README
+DocFiles: qprop_doc.txt qmil_doc.txt version_notes.txt README
Description: Propeller + motor performance analysis
DescDetail: <<
QPROP is an analysis program for predicting the performance
@@ -42,11 +42,6 @@
for the Minimum Induced Loss (MIL) condition. It can also
generated windmill geometries for the MIL or Maximum Total Power
(MTP) conditions. See the qmil_doc.txt document for more info.
-
- User's manuals: qprop_doc.txt qmil_doc.txt
- Theory document: qprop_theory.pdf
-
- Prop measurement info sheet: prop_measure.pdf
<<
DescPort: <<
Compiles with double precision math.
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