Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs17:/tmp/cvs-serv22275
Modified Files:
atlas.info scilab-atlas.info scilab-atlas.patch
Added Files:
lpsolve-scilab.info
Log Message:
new pkg, + updates to existing ones with maintainer's permission
Index: scilab-atlas.info
===================================================================
RCS file:
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/scilab-atlas.info,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- scilab-atlas.info 14 Oct 2007 00:01:09 -0000 1.7
+++ scilab-atlas.info 6 Nov 2007 02:07:29 -0000 1.8
@@ -1,44 +1,60 @@
Package: scilab-atlas
-Version: 4.1
+Version: 4.1.1
Revision: 1001
-Distribution: 10.4
Maintainer: Jeffrey Whitaker <[EMAIL PROTECTED]>
-Depends: g95, tcltk, xaw3d-shlibs, atlas
-BuildDepends: tcltk-dev, xaw3d, libncurses5 (>= 5.4-20041023-1006), ocaml,
libsablot (>= 0.98-1024)
+Depends: gcc42-shlibs, libgtkhtml2-shlibs, tcltk, vte
+BuildDepends: <<
+ atlas, atk1, gcc42, glib2-dev, gtk+2-dev, libgettext3-dev, libgtkhtml2,
libiconv-dev, libncurses5,
+ libsablot, libxml2, ocaml, pango1-xft2-dev, readline5, tcltk-dev,
vte-dev, xaw3d, x11-dev
+<<
Conflicts: scilab
Replaces: scilab
Source: http://www.scilab.org/download/%v/scilab-%v-src.tar.gz
SourceDirectory: scilab-%v
-Source-MD5: 3003fe63088558b931a11127fb8d8ccc
+Source-MD5: 0b603c8e40334d0be97eb4ac104926bf
Patch: %n.patch
PatchScript: <<
+#!/bin/sh -ev
perl -pi -e 's,(head|tail) +\-([0-9]),\1 \-n\2,g' scripts/sc_cpp
perl -pi -e 's|[/]sw/|%p/|g' configure
perl -pi -e 's,\#ifdef B42UNIX,#define B42UNIX\n#ifdef B42UNIX,'
routines/console/zzledt.c
- perl -pi -e 's|.*setslatecjmp.*||g' routines/interf/matimp.f
- /usr/bin/sed -i -e '21,42d' scripts/scilab.g.in
+ perl -pi.bak -e 's|.*setslatecjmp.*||g' routines/interf/matimp.f
+ sed -i -e '21,42d' scripts/scilab.g.in
+ perl -pi -e 's,-DFAKEXDRFLOAT ,,' pvm3/conf/DARWIN.def
+ sed -r -e 's;-Wl,-shared -g ;-Wl,-bundle ;' < routines/Javasci/Makefile.linux
> routines/Javasci/Makefile.darwin
+ sed -ri.bak -e 's,-module,& -bundle_loader %p/lib/scilab-%v/bin/scilex,' \
+ -e 's,--quiet,,' -e 's,^\t@,\t,' Makemex.in config/Makeso.incl.in
+# make the scipad editor not crash on startup
+ printf "function tklib=gettklib()\n tklib='@GETLIBTK@'\nendfunction\n" >
macros/util/gettklib.sci.in
+# don't know how to coax configure to define this:
+ sed -i.bak -e '/G95_FORTRAN/c \
+#define G95_FORTRAN 1' routines/machine.h.in
+# fix perms
+ perl -pi -e 's,(install) (ACKNOWLEDGEMENTS),\1 -m 644 \2,' Makefile.in
<<
DescPackaging: Patch and patchscript contain /sw because upstream source does
-ConfigureParams: --without-pvm --with-tcl-include=%p/include
--with-tcl-library=%p/lib --with-ocaml --without-java
--with-atlas-library=%p/lib
+ConfigureParams: --with-gfortran --with-gtk2 --with-tcl-include=%p/include
--with-tcl-library=%p/lib --with-ocaml --with-atlas-library=%p/lib
--without-java
+# --without-pvm ?
CompileScript: <<
- #!/bin/sh -ex
- perl -pi -e 's|g77|g95|g' configure
+ #!/bin/sh -ev
+ perl -pi -e 's|g77|gfortran|g' configure
./configure %c
# on intel, dlamc1 needs -ffloat-store, otherwise it produces an infinite loop
# doesn't harm on ppc either
- make FC_OPTIONS="-O2 -ffloat-store" routines/lapack/dlamch.o
+# maybe not with gfortran ? or no longer ? comment out to try..
+# make FC_OPTIONS="-O2 -ffloat-store" routines/lapack/dlamch.o
routines/lapack/slamch.o
# remove annoying disclaimer from greeting message
make CFLAGS="-U__APPLE__" routines/system/banier.o
make all man
<<
InstallScript: <<
-#!/bin/sh -ex
+#!/bin/sh -ev
make install PREFIX=%i DESTDIR=%p
ln -fs %p/lib/scilab-%v/bin/scilab %i/bin/scilab
ln -fs %p/lib/scilab-%v/bin/intersci %i/bin/intersci
ln -fs %p/lib/scilab-%v/bin/intersci-n %i/bin/intersci-n
<<
-PostInstScript: (cd %p/lib/scilab-%v; make)
+PostInstScript: cd %p/lib/scilab-%v; make
Description: Software package for numerical computations
License: OSI-Approved
Homepage: http://www.scilab.org
Index: atlas.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/atlas.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- atlas.info 14 Oct 2007 00:01:09 -0000 1.4
+++ atlas.info 6 Nov 2007 02:07:29 -0000 1.5
@@ -1,71 +1,117 @@
Package: atlas
-Version: 3.7.11
+Version: 3.8.0
Revision: 1
-Distribution: 10.4
Description: Portably optimal linear algebra software
DescDetail: <<
-The current version provides a complete BLAS and LAPACK API.
+The current version provides a complete BLAS and LAPACK API.
For many operations, ATLAS achieves performance on par
with machine-specific tuned libraries.
-Files installed:
-cblas.h : The C header file for the C interface to the BLAS.
-liblapack.a : The LAPACK routines provided by ATLAS, plus the rest
- of LAPACK from netlib.org.
-libcblas.a : The ANSI C interface to the BLAS.
-libf77blas.a : The Fortran77 interface to the BLAS.
-libatlas.a : The main ATLAS library, providing low-level routines for
- all interface libs.
-When answering "yes" whether to enable threads, one gets also the threaded
-variants libptcblas.a and libptf77blas.a
+Installs also LAPACK's docs and manpages.
+Headers: cblas.h clapack.h, plus the atlas headers
+Libraries installed:
+liblapack.a : The LAPACK routines provided by ATLAS,
+ plus the rest of LAPACK from netlib.org.
+libcblas.a : The ANSI C interface to the BLAS.
+libf77blas.a : The Fortran77 interface to the BLAS.
+libatlas.a : The main ATLAS library,
+ providing low-level routines for all interface libs.
+Plus the threaded variants libptcblas.a and libptf77blas.a,
+ and an all-encompassing libatlas.dylib
<<
DescPort: <<
The optimized subset of LAPACK provided by ATLAS is merged
-with the full LAPACK from http://www.netlib.org/lapack.
+with the full LAPACK from http://www.netlib.org/lapack.
<<
DescUsage: <<
-Order is important when linking! Use:
--L%p/lib -llapack -lcblas -lf77blas -latlas
-Must be run interactively (asks a lot of questions, use default answers
-unless you really know what you are doing). For "architecture" choose
-"UNKNOWN" if you have a G3.
+Order is important when linking! Use:
+-L%p/lib -llapack -lcblas -lf77blas -latlas
<<
-Source: mirror:sourceforge:math-atlas/%n%v.tar.gz
-Source-MD5: d3c6f302a6dbcd3f30803e1392f20012
-Source2: http://www.netlib.org/lapack/lapack.tgz
-Source2-MD5: a24f59304f87b78cdc7da2ae59c98664
+Source: mirror:sourceforge:math-atlas/%n%v.tar.bz2
+Source-MD5: fd42a00f36243bf4815d035b226ec305
+Source2: http://www.netlib.org/lapack/lapack-3.1.1.tgz
+Source2-MD5: 00b21551a899bcfbaa7b8443e1faeef9
+SourceDirectory: ATLAS
License: BSD
-#Patch: %n.patch
+# since we're experimenting with building a dylib :
+BuildDependsOnly: true
+BuildDepends: gcc42, fink (>= 0.27.99)
+Depends: gcc42-shlibs
PatchScript: <<
-## perl -pi -e 's,faltivec,faltivec -save-temps,; s, \-j (2|%d),,' config.c
-## perl -pi -e 's, \-j (2|%d),,' config.c
-# perl -pi -e 's,ATL_(c|)prow2blkT\.c$,$& \-O2,' makes/Make.gpmm
-perl -pi -e 's|g77|g95|g' config.c
-perl -pi -e 's|g77|g95|g' ../LAPACK/INSTALL/make.inc.LINUX
+#!/bin/sh -ev
+# -ftree-loop-linear causes problems with xconfig.
+# -fgcse-after-reload -fsched-interblock -freorder-blocks also _ though
they're implied by -O3 !
+cd ..; ln -s lapack-3.1.1 LAPACK
+cd LAPACK
+sed -e 's|g77|gfortran|g' < INSTALL/make.inc.LINUX > make.inc
+perl -pi -e 's,\.\./\.\./blas\$\(PLAT\)\.a,%b/../bld/lib/libptf77blas.a
%b/../bld/lib/libptcblas.a %b/../bld/lib/libatlas.a,' \
+ make.inc
<<
-BuildDepends: g95 (>= 0.50-20060604)
-SourceDirectory: ATLAS
CompileScript: <<
- (cd ../LAPACK; sed 's|-funroll-all-loops -fno-f2c -O3|-funroll-all-loops
-O3|g' < INSTALL/make.inc.LINUX > make.inc; cd SRC; make all)
- (make CC=cc config; export ARCH=`ls -1t Make* | head -n1 | cut -f2 -d"."`; cp
../LAPACK/lapack_LINUX.a lib/$ARCH/liblapack.a; mv Make.$ARCH Make.$ARCH.orig;
sed 's|gcc|cc|g' < Make.$ARCH.orig > Make.$ARCH; make install arch=$ARCH)
+#!/bin/sh -ev
+ if [ %m = 'i386' ]; then mflags="-mfpmath=sse -msse -msse2 -msse3 -m32";
iflags="-mfpmath=387"; else mflags=''; iflags=''; fi
+ lflags="-O3 -fomit-frame-pointer -fgcse-sm -fgcse-las -ftree-loop-linear
$mflags"
+ iflags="-O3 -fomit-frame-pointer $iflags"
+ cd ../LAPACK
+ sed -i.bak -e "s;\(-funroll-all-loops\) -O3;\1 $lflags;" -e
's,^TIMER,\#TIMER,' -e '/INT_ETIME/s,^\# *,,' make.inc
+ make lapacklib
+# atlas 'forgets' scabs1 (not dcabs1 !), so we get it here..
+ cd BLAS/SRC; make scabs1.o; cd -
+ mkdir -p ../bld/lib
+ ar cr ../bld/lib/libf77blas.a BLAS/SRC/scabs1.o; ar cr
../bld/lib/libptf77blas.a BLAS/SRC/scabs1.o
+ cd ../bld
+ ../ATLAS/configure --prefix=%p
--with-netlib-lapack=%b/../LAPACK/lapack_LINUX.a -v 2 \
+ -C sk gcc-4 -C dk gcc-4 -C sm gcc-4 -C dm gcc-4 -C xc gcc-4 -C ic gcc-4
-F ic "$iflags" -F if "$iflags"
+ make
+<<
+InfoTest: <<
+TestScript: <<
+#!/bin/sh -ev
+ cd ../LAPACK
+ mv lapack_LINUX.a lapack_LINUX.a~; ln -s ../bld/lib/liblapack.a lapack_LINUX.a
+ make lapack_testing blas_testing
+ # to get timing uncluttered by compilation times, we'll repeat the tests at
the end of the log:
+ rm {BLAS,TESTING}/*.out
+ cd ../bld
+ make test pttest time
+ cd ../LAPACK
+ time { make blas_testing; cd TESTING; make ; }
+# here: real 3m10.903s; user 2m55.622s; sys 0m15.570s (average of 3)
+<<
<<
InstallScript: <<
- mkdir -p %i/lib
- mkdir -p %i/include
- mkdir -p %i/share/doc/%n
- (export ARCH=`ls -1t Make* | head -n1 | cut -f2 -d"."`; ranlib
lib/$ARCH/lib*a; cp lib/$ARCH/lib*a %i/lib)
- cp include/cblas.h %i/include
- cp doc/* %i/share/doc/%n
- cp README %i/share/doc/%n
- head -n31 config.c > %i/share/doc/%n/LICENSE
+#!/bin/sh -ev
+ mkdir -p %i/share/doc/%n/LAPACK
+ cp doc/* README %i/share/doc/%n
+ head -n29 bin/atlas_tee.c > %i/share/doc/%n/LICENSE
+ cp -pPR ../LAPACK/manpages/{blas/,}man %i/share
+ cp -pPR ../LAPACK/{html,COPYING,README} %i/share/doc/%n/LAPACK
+ ln -s html/index.html %i/share/doc/%n/LAPACK
+ cd ../bld/lib
+ # we first make a shared lib; easier to just write the command here than to
fix lib/Makefile ...
+ # put this here to make sure it is after the testscript, else dylib might
affect timings.
+ # dylib just made to experiment; not sure this should stay.
+ # The '-m' flag at the end is dirty trick to get around an "undefined symbol"
for _MAIN__, from -lgfortranbegin;
+ # _ it swallows the immediately following -lgfortranbegin in the command
transmitted to /usr/bin/libtool ...
+ # There are no undefined symbols w/o "from ..." in the resulting dylib.
+ # Is it the -all_load flag that causes the symbol "_main" from
libgfortranbegin.a to be loaded ?
+ ###
+ # for now, we make an exported symbols list out of the external symbols of
liblapack, libptcblas and libptf77blas
+ nm -mfg liblapack.a libptf77blas.a libptcblas.a|fgrep ' (__TEXT,__text)
external '|cut -f4 -d' ' > lst
+ gfortran -dynamiclib -single_module -all_load -install_name
%p/lib/libatlas.dylib -o libatlas.dylib \
+ liblapack.a libptf77blas.a libptcblas.a libatlas.a -Wl,-x -dead_strip
-exported_symbols_list lst -m
+ # lib still has %p/lib/gcc4.2/lib/libgcc_s.1.dylib unnecessarily among its
load commands _
+ # don't know yet how to remove that cleanly (except by issuing the ld command
myself ..)
+ cd ..
+ make install DESTDIR=%i
+ ranlib %i/lib/*.a
+ cp -p lib/*.dylib %i/lib
+ chmod -R a+rX %i/share
<<
-PostInstScript: <<
- ranlib %p/lib/libatlas.a
- ranlib %p/lib/libcblas.a
- ranlib %p/lib/libf77blas.a
- ranlib %p/lib/liblapack.a
- ranlib %p/lib/libtstatlas.a
- ranlib %p/lib/libptcblas.a || true
- ranlib %p/lib/libptf77blas.a || true
+Shlibs: !%p/lib/lib%n.dylib
+SplitOff: <<
+ Package: %N-doc
+ Files: share/man share/doc/%N/LAPACK
+ InstallScript: mkdir -p %i/share/doc; ln -s %N %i/share/doc/%n
<<
Homepage: http://math-atlas.sourceforge.net
Maintainer: Jeffrey Whitaker <[EMAIL PROTECTED]>
Index: scilab-atlas.patch
===================================================================
RCS file:
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/scilab-atlas.patch,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- scilab-atlas.patch 19 Dec 2006 14:19:51 -0000 1.2
+++ scilab-atlas.patch 6 Nov 2007 02:07:29 -0000 1.3
@@ -263,7 +263,7 @@
--- scilab/configure.orig 2006-12-18 06:52:31.000000000 -0700
+++ scilab/configure 2006-12-18 06:52:49.000000000 -0700
@@ -25983,7 +25983,7 @@
- FC=g95
+ FC=gfortran
FC_OPTIONS='-O2'
FC_OPTIONS_O0=
- FC_LDFLAGS='-L/sw/lib -ldl -lcc_dynamic'
--- NEW FILE: lpsolve-scilab.info ---
Info2: <<
Package: lpsolve-scilab
Version: 5.5.0.10
Revision: 1
# rev-up and change next line at every new version of scilab or lpsolve
Type: scilab (4.1.1), maj (5.5)
BuildDepends: lpsolve%type_raw[maj]-dev (>= %v-1), libxslt-bin, scilab-atlas
(>= %type_raw[scilab]-1) | scilab (>= %type_raw[scilab]-1), sed | ssed
Depends: lpsolve%type_raw[maj]-shlibs (>= %type_raw[maj].0.0-1), scilab-atlas
(>= %type_raw[scilab]-1) | scilab (>= %type_raw[scilab]-1)
Source: mirror:sourceforge:lpsolve/lp_solve_%v_scilab_source.tar.gz
Source-MD5: e885927a3b9ce0d8374bb3d272a84818
SourceDirectory: lp_solve_%type_raw[maj]
PatchScript: <<
#!/bin/sh -ev
# get rid of long path
mv extra/scilab/lpsolve/* .; rm -fR extra
# adapt paths
perl -pi.bak -e
's,/usr/lib/liblpsolve%type_pkg[maj]\.so,%p/lib/liblpsolve.dylib,' builder.sce
perl -pi.bak -e 's,c:/scilab\-2\.7,%p/lib/scilab-%type_raw[scilab],;
s,z:/lp_solve_%type_raw[maj],%p/include/lpsolve,; s,\$.*\),%b,' Path.incl
# add trailing / to Mpath, and handle the 'loading' of man-pages and macros
self, but using formatman(.,"xml")
sed -ri -e "s:/[']+\+p,end([']*):&\n \1p=p+\1'/'\1\1:" -e "s,^( )',\1&," -e
"/genlib|\/man/d" \
-e "s:(formatman(\(.*))\):\1,'xml'):" -e "s,-1,0," builder.sce
# missing "endfunction"
for f in macros/*.sci; do echo endfunction >> $f ; done
# buglets in man files
sed -ri.bak -e "/dual problem|lp created/,/TP 10/{ /.TP 10/d }" man/lp*.man
sed -ri.bak -e '/SH NAME/,+2{ /^$/d }' man/sclpsolve.man
# useless files, which may further prevent regeneration of some of them
rm macros/*.bin man/*.cat libs/*.dll
# add hash.c to the needed sources :
sed -ri.bak -e '/^files=/,/^end/{
/MSDOS/d
/^end/d
}' src/builder.sce
# and fix hash.c :
sed -ri.bak -e 's,malloc.h,stdlib.h,' src/hash.c
<<
CompileScript: <<
#!/bin/sh -ev
# next doesn't work.. Try the same with '-f'
# scilab -nb -nwni -e "exec builder.sce;exit;"
cat > cmd <<-'EOF'
exec builder.sce
genlib("lpsolvelib",'macros')
exit
EOF
scilab -nb -nwni -f cmd
## first the interface itself, that the builder forgot to make
# (the removal of some symbols dosn't save very much, should really take
control of the compilations too then)
cc -bundle src/lpmex_gateway.o libs/sclpsolve.a %p/lib/liblpsolve.dylib -o
liblpmex.so \
-bundle_loader %p/lib/scilab-%type_raw[scilab]/bin/scilex -Wl,-x
-dead-strip
nm -m liblpmex.so|fgrep -v ' (from '|sed -r -e 's,.* ,,'|fgrep hash >
unexp_sym
cc -bundle src/lpmex_gateway.o libs/sclpsolve.a %p/lib/liblpsolve.dylib -o
liblpmex.so \
-bundle_loader %p/lib/scilab-%type_raw[scilab]/bin/scilex -Wl,-x
-dead-strip \
-unexported_symbols_list unexp_sym
## now the help pages
rm man/{whatis,*.bak,*.man}
# the %%helps(1,:) is needed as first item next to ensure 'man/eng' in the
first item of %%helps,
# else xmltohtml breaks on the var 'manpath' in gener_index; one cannot put
the whole %%helps
# as first item since then, if %N is already installed, (rel) links would be
made (from %b) to
# the installed .htm files instead of to the current dir, and those would be
wrong when installed.
cat > cmd <<-'EOF'
%%helps = [%%helps(1,:); '%b/man','Mixed Integer Linear Programming']
xmltohtml('%b/man','Mixed Integer Linear Programming')
exit
EOF
scilab -nb -nw -f cmd
rm -f man/*.xml
sed -ri -e 's,%b/man,%p/share/%N/help,' *.htm
mv *.htm man
mv man/scilab.htm .
<<
InstallScript: <<
#!/bin/sh -ev
mkdir -p %i/share/%N %i/share/doc/%N/examples
%i/lib/scilab-%type_raw[scilab]/contrib
%i/share/doc/lpsolve%type_raw[maj]-shlibs
ln -s ../%n %i/share/doc/lpsolve%type_raw[maj]-shlibs
cp -pPR liblpmex.so %i/lib/scilab-%type_raw[scilab]/contrib
cp -pPR macros %i/share/%N
cp -pPR man %i/share/%N/help
cp -p {ex,lpd}*.sce %i/share/doc/%N/examples
<<
DocFiles: <<
scilab.htm
README.txt:README
<<
PostInstScript: <<
# updating scilab's main contents.htm and index.htm
cd %p/share/%N/help
sed -i.bak -e "/^<\/body>/i \
$(fgrep lpsolve contents.htm|sed -r -e 's,/dd>,&\\,' -e '$s,\\$,,')"
%p/lib/scilab-%type_raw[scilab]/man/eng/contents.htm
sed -i.bak -e "/<\/dl>/i \
`fgrep lpsolve index.htm`" %p/lib/scilab-%type_raw[scilab]/man/eng/index.htm
# the .bak above and their removal next is for compatibility with stupid
/usr/bin/sed, to avoid a dep on sed|ssed
# (and similarly in PreRmScript)
rm -f {contents,index}.htm %p/lib/scilab-%type_raw[scilab]/man/eng/*.htm.bak
# updating scilab's startup file to make lpsolve known
# add_help_chapter('Mixed Integer Linear Programming','%p/share/%N/help') ?
echo "%%helps = [%%helps; '%p/share/%N/help','Mixed Integer Linear
Programming']
lpsolvelib=lib('%p/share/%N/macros/')
addinter('%p/lib/scilab-%type_raw[scilab]/contrib/liblpmex.so','lpmex_gateway','sclpsolve')"
\
>> %p/lib/scilab-%type_raw[scilab]/scilab.star
<<
PreRmScript: <<
sed -i.bak -e "/lpsolve/d"
%p/lib/scilab-%type_raw[scilab]/{scilab.star,man/eng/{contents,index}.htm}
rm -f
%p/lib/scilab-%type_raw[scilab]/{scilab.star,man/eng/{contents,index}.htm}.bak
<<
Description: Scilab interface to the mixed LP pkg lpsolve
DescPort: <<
hack your way through ...
<<
DescPackaging: <<
- Effort to follow fink's FHS policy
- Patching scilab.star in the Pre.. and Post scripts is non-kosher: it
clearly would lead to trouble if scilab is reinstalled w/o afterwards
reinstalling this pkg. If scilab.star can't be made a conf-file, maybe
it can be made to source a (system-wide, in %p/etc) conf-file as its
last command ?
- Also the removal in the PostInstScript of files installed by dpkg
is probably not very kosher _ will eg trigger dpkg-checkall..
But those files are meaningless at that stage...
<<
DescUsage: <<
For doc on lpsolve, cf http://lpsolve.sourceforge.net/%type_raw[maj]/
For doc on this interface from Scilab, cf %p/share/doc/%n/scilab.htm
<<
License: LGPL
HomePage: http://sourceforge.net/projects/lpsolve/
Maintainer: JF Mertens <[EMAIL PROTECTED]>
<<
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