Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sc8-pr-cvs17.sourceforge.net:/tmp/cvs-serv5946
Modified Files:
bioperl-run-pm.info
Added Files:
bioperl-run-pm.patch
Log Message:
new upstream
Index: bioperl-run-pm.info
===================================================================
RCS file:
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/bioperl-run-pm.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- bioperl-run-pm.info 16 Jun 2007 22:45:03 -0000 1.4
+++ bioperl-run-pm.info 1 Dec 2007 19:10:26 -0000 1.5
@@ -1,25 +1,47 @@
Info2: <<
Package: bioperl-run-pm%type_pkg[perl]
-Version: 1.5.1
+Version: 1.5.2
Revision: 1
Architecture: (%type_pkg[perl] = 581) powerpc, (%type_pkg[perl] = 584) powerpc
Distribution: (%type_pkg[perl] = 581) 10.3, (%type_pkg[perl] = 581) 10.4,
(%type_pkg[perl] = 584) 10.3, (%type_pkg[perl] = 584) 10.4
-Depends: bioperl-pm%type_pkg[perl], algorithm-diff-pm
-Source: http://www.bioperl.org/DIST/bioperl-run-%v.tar.bz2
+Depends: bioperl-pm%type_pkg[perl] (>= %v), algorithm-diff-pm
+BuildDepends: perl%type_pkg[perl]-core, fink (>= 0.20.1-1),
module-build-pm%type_pkg[perl] (>= 0.2808)
+
+Source: http://www.bioperl.org/DIST/bioperl-run-%v_100.tar.bz2
Replaces: bioperl-run-pm560, bioperl-run-pm580, bioperl-run-pm581
-Type: perl (5.8.1 5.8.6)
+Type: perl (5.8.1 5.8.6 5.8.8)
NoPerlTests: true
UpdatePOD: True
-Source-MD5: 6089b828b9c482932fc182ae65bc4341
-DocFiles: Changes INSTALL.PROGRAMS MANIFEST README AUTHORS
+Source-MD5: cc44c719820608f92139f4a81d472ea6
+DocFiles: Changes INSTALL INSTALL.PROGRAMS MANIFEST README AUTHORS
Description: Perl wrappers for bioinformatics
+
+Patch: %{ni}.patch
+CompileScript: <<
+#!/bin/sh -ex
+ exec 2>&1
+ perlversion=%type_raw[perl]
+ eval "`perl$perlversion -V:archname`"
+ perl$perlversion Build.PL \
+ --install_path arch=%i/lib/perl5/$perlversion/$archname \
+ --install_path bin=%i/bin \
+ --install_path bindoc=%i/lib/perl5/$perlversion/man/man1 \
+ --install_path lib=%i/lib/perl5/$perlversion \
+ --install_path libdoc=%i/lib/perl5/$perlversion/man/man3 \
+ --install_path script=%i/bin
+ ./Build
+# ./Build test
+<<
+
InstallScript: <<
- %{default_script}
- mv %i/share/man %i/lib/perl5/%type_raw[perl]
-
- rm %i/lib/perl5/%type_raw[perl]/darwin-thread-multi-2level/auto/Bio/.packlist
+ ./Build install
+ find %d -name .packlist -exec rm -rf {} \;
+
+ mkdir -p %i/share/%n/scripts
+ mv %i/bin/*.pl %i/share/%n/scripts/
<<
+
DescDetail: <<
Bioperl-run contain modules that provides a PERL interface to various
bioinformatics applications. This allows various applications to be
--- NEW FILE: bioperl-run-pm.patch ---
diff -Naur bioperl-run-1.5.2_100/Build.PL bioperl-run-1.5.2_100-patched/Build.PL
--- bioperl-run-1.5.2_100/Build.PL 2006-12-06 11:40:24.000000000 -0500
+++ bioperl-run-1.5.2_100-patched/Build.PL 2007-12-01 14:00:14.000000000
-0500
@@ -33,7 +33,7 @@
);
# Ask questions
-pise_email();
+#pise_email();
$build->choose_scripts;
# Create the build script and exit
diff -Naur bioperl-run-1.5.2_100/ModuleBuildBioperl.pm
bioperl-run-1.5.2_100-patched/ModuleBuildBioperl.pm
--- bioperl-run-1.5.2_100/ModuleBuildBioperl.pm 2006-12-06 11:40:24.000000000
-0500
+++ bioperl-run-1.5.2_100-patched/ModuleBuildBioperl.pm 2007-12-01
14:01:10.000000000 -0500
@@ -91,9 +91,10 @@
}
}
closedir($scripts_dir);
- my $question = $int_ok ? "Install [a]ll Bioperl scripts, [n]one, or choose
groups [i]nteractively?" : "Install [a]ll Bioperl scripts or [n]one?";
+# my $question = $int_ok ? "Install [a]ll Bioperl scripts, [n]one, or
choose groups [i]nteractively?" : "Install [a]ll Bioperl scripts or [n]one?";
- my $prompt = $self->prompt($question, 'a');
+# my $prompt = $self->prompt($question, 'a');
+ my $prompt = 'a';
if ($prompt =~ /^[aA]/) {
$self->log_info(" - will install all scripts\n");
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