Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory fdv4jf1.ch3.sourceforge.com:/tmp/cvs-serv22847
Modified Files:
pdb2pqr.info apbs.info apbs-mpi.info
Log Message:
fixed for 10.6 32-bit
Index: apbs-mpi.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/apbs-mpi.info,v
retrieving revision 1.16
retrieving revision 1.17
diff -u -d -r1.16 -r1.17
--- apbs-mpi.info 26 Aug 2009 16:20:26 -0000 1.16
+++ apbs-mpi.info 7 Sep 2009 18:29:32 -0000 1.17
@@ -1,10 +1,11 @@
Info2: <<
Package: apbs-mpi-%type_pkg[handler]
Version: 1.1.0
-Revision: 6
+Revision: 7
Type: handler (lammpi openmpi)
#Conflicts: apbs, apbs-mpi-lammpi, apbs-mpi-openmpi
#Replaces: apbs, apbs-mpi-lammpi, apbs-mpi-openmpi
+BuildConflicts: g77, g95, fort77
Source: http://switch.dl.sourceforge.net/sourceforge/apbs/apbs-%v-source.tar.gz
Source-MD5: ca31ba09714e4fc9acce91e7961569cd
SourceDirectory: apbs-%v-source
@@ -21,7 +22,10 @@
SetCFLAGS: -O3
ConfigureParams: --build=%m-apple-darwin`uname -r|cut -f1 -d.`
--host=%m-apple-darwin`uname -r|cut -f1 -d.`
CompileScript: <<
-#!/bin/zsh -efv
+#!/bin/bash -efv
+PATH=%p/bin:%p/sbin:${PATH} ; export PATH
+source %p/bin/init.sh
+#
BLAS_DIR='/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A'
if [[ %type_pkg[handler] == "openmpi" ]]; then
F77=%p/bin/mpif77 ./configure %c --disable-blas \
Index: apbs.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/apbs.info,v
retrieving revision 1.20
retrieving revision 1.21
diff -u -d -r1.20 -r1.21
--- apbs.info 26 Aug 2009 16:20:26 -0000 1.20
+++ apbs.info 7 Sep 2009 18:29:32 -0000 1.21
@@ -1,12 +1,13 @@
Package: apbs
Version: 1.1.0
-Revision: 6
+Revision: 7
Source: mirror:sourceforge:%n/%n-%v-source.tar.gz
Source-MD5: ca31ba09714e4fc9acce91e7961569cd
Depends: readline-shlibs (>= 4.3-1028), gnuplot (>=4.2.0) | gnuplot-nox |
gnuplot-nogtk, pdb2pqr, gcc44-shlibs, python26
BuildDepends: gcc44, python26, fink (>= 0.24.12)
#Conflicts: apbs-mpi, maloc, maloc-mpi-lammpi, maloc-mpi-openmpi,
apbs-mpi-openmpi, apbs-mpi-lammpi
#Replaces: apbs-mpi, maloc, maloc-mpi-lammpi, maloc-mpi-openmpi,
apbs-mpi-openmpi, apbs-mpi-lammpi
+BuildConflicts: g77, g95, fort77
Conflicts: maloc, maloc-mpi-lammpi, maloc-mpi-openmpi
Replaces: maloc, maloc-mpi-lammpi, maloc-mpi-openmpi
ConfigureParams: --build=%m-apple-darwin`uname -r|cut -f1 -d.`
--host=%m-apple-darwin`uname -r|cut -f1 -d.`
@@ -18,7 +19,9 @@
sed 's|@INSTALL_DIR@|%d|g' < %{PatchFile} | patch -p1
<<
CompileScript: <<
-#!/bin/zsh -efv
+#!/bin/bash -efv
+PATH=%p/bin:%p/sbin:${PATH} ; export PATH
+source %p/bin/init.sh
BLAS_DIR='/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A'
py_path=%p/bin/python2.6 F77=gfortran ./configure %c --enable-python
--with-python=%p/bin/python2.6 \
--with-blas="-L${BLAS_DIR} -lblas -Wl,-framework -Wl,vecLib -Wl,-undefined
-Wl,dynamic_lookup" FFLAGS="-O3"
Index: pdb2pqr.info
===================================================================
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/pdb2pqr.info,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -d -r1.13 -r1.14
--- pdb2pqr.info 9 May 2009 17:42:53 -0000 1.13
+++ pdb2pqr.info 7 Sep 2009 18:29:32 -0000 1.14
@@ -1,6 +1,6 @@
Package: pdb2pqr
Version: 1.4.0
-Revision: 2
+Revision: 3
Source: mirror:sourceforge:%n/%n-%v.tar.gz
Source-MD5: 2ff9907c06b5420cf52e73717fb01a9d
SourceDirectory: %n-%v
@@ -11,18 +11,34 @@
NoSetLDFLAGS: true
CompileScript: <<
#!/bin/zsh -efv
-perl -pi -e 's|fort xlf95 lf95 g95|fort xlf95 lf95 g95 gfortran|g'
./propka/configure
+PATH=%p/bin:%p/sbin:${PATH} ; export PATH
+source %p/bin/init.sh
+#
+if [[ "%m" != "x86_64" ]]; then
+ export CCPFLAGS="-m32"
+ export LDFLAGS="-m32"
+ perl -pi -e 's|-Wl,-framework -Wl,Python
-bundle|%p/lib/python2.6/config/libpython2.6.dylib -m32 -bundle|g' ./configure
+ perl -pi -e 's|-Wl,-framework -Wl,Python
-bundle|%p/lib/python2.6/config/libpython2.6.dylib -m32 -bundle|g'
./propka/configure
+else
+ perl -pi -e 's|-Wl,-framework -Wl,Python
-bundle|%p/lib/python2.6/config/libpython2.6.dylib -bundle|g' ./configure
+ perl -pi -e 's|-Wl,-framework -Wl,Python
-bundle|%p/lib/python2.6/config/libpython2.6.dylib -bundle|g'
./propka/configure
+fi
+perl -pi -e 's|fort xlf95 lf95 g95|gfortran|g' ./propka/configure
perl -pi -e 's|/usr/bin/python|%p/bin/python2.6|g' ./pdb2pka/pka.py
perl -pi -e 's|/usr/bin/python|%p/bin/python2.6|g' ./src/psize.py
-perl -pi -e 's|-Wl,-framework -Wl,Python
-bundle|%p/lib/python2.6/config/libpython2.6.dylib -bundle|g' ./configure
-perl -pi -e 's|-Wl,-framework -Wl,Python
-bundle|%p/lib/python2.6/config/libpython2.6.dylib -bundle|g' ./propka/configure
rm -fr contrib
./configure --with-max-atoms="1000000" --without-url
--with-python=%p/bin/python2.6 --with-f77=gfortran
+if [[ "%m" != "x86_64" ]]; then
+ perl -pi -e 's|-DPACKAGE|-m32 -DPACKAGE|g' **/Makefile
+fi
make
rm -f **/*.o
<<
InstallScript: <<
#!/bin/zsh -efv
+source %p/bin/init.sh
+PATH=%p/bin:%p/sbin:${PATH} ; export PATH
+
mkdir -p %i/share/pdb2pqr
cp -R * %i/share/pdb2pqr
#
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