Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory vz-cvs-3.sog:/tmp/cvs-serv7785
Added Files:
boxshade.info clustalw2.info
Log Message:
copy to 10.7
--- NEW FILE: clustalw2.info ---
Package: clustalw2
Version: 2.0.12
Revision: 1
Description: Multiple Sequence Alignment Program
License: Restrictive/Distributable
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Recommends: boxshade
Source: ftp://ftp.ebi.ac.uk/pub/software/%n/%v/clustalw-%v.tar.gz
SourceDirectory: clustalw-%v
Source-MD5: 8d0c50ffbe5898b03509aa0a7709f642
GCC: 4.0
InstallScript: <<
/usr/bin/strip src/%n
/usr/bin/make -w install DESTDIR=%d
/usr/bin/install -d -m 755 %i/lib/%n
/usr/bin/install -m 644 clustalw_help %i/lib/%n
<<
DocFiles: LICENSE README
Homepage: http://www.ebi.ac.uk/Tools/clustalw2/index.html
DescDetail: <<
ClustalW2 is a general purpose multiple sequence alignment program for
DNA or proteins. It produces biologically meaningful multiple sequence
alignments of divergent sequences. It calculates the best match for the
selected sequences, and lines them up so that the identities, similarities
and differences can be seen. Evolutionary relationships can be seen via
viewing Cladograms or Phylograms.
<<
DescUsage: clustalw2
DescPackaging: <<
Software is free and redistributable except for commercial gain.
<<
--- NEW FILE: boxshade.info ---
Package: boxshade
Version: 3.3.1
Revision: 2
Description: Pretty-prints multiple sequence alignments
License: Public Domain
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Recommends: clustalw
Source: ftp://www.isrec.isb-sib.ch/pub/software/unix/%n/%v/source.tar.Z
NoSourceDirectory: true
SourceRename: %n-%v.tar.Z
Source-MD5: bbddcde8cf1018246cf80aba820b574a
PatchScript: <<
head -n 137 box.c > INFO
<<
CompileScript: make -f makefile.unx
InstallScript: <<
mkdir -p %i/bin
mkdir -p %i/share/%n
install -m 755 boxshade %i/bin/boxshade
install -m 644 *.grp %i/share/%n/
install -m 644 *.par %i/share/%n/
install -m 644 *.sim %i/share/%n/
<<
DocFiles: INFO
RuntimeVars: <<
BOXDIR: %p/share/%n
<<
Homepage: http://www.ch.embnet.org/software/BOX_form.html
DescDetail: <<
BOXSHADE is a program for pretty-printing multiple sequence
alignment output. The program itself doesn't do any
alignment, you have to use a multiple alignment program
like ClustalW or Pileup and use the output of these programs
as input for BOXSHADE. Of course, you can also use manually
aligned sequences.
<<
DescUsage: <<
See http://www.ch.embnet.org/software/BOX_faq.html for
information and usage. Use 'boxshade -help' for other useful
command line options.
<<
DescPackaging: <<
BOXSHADE uses the environment variable BOXDIR to point to the location of the
accessory data files.
<<
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