Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory vz-cvs-3.sog:/tmp/cvs-serv19914
Added Files:
massxpert.info massxpert.patch
Log Message:
to 10.7
only the -mac variant since the -x11 variant insists on looking for files in
the build directory
--- NEW FILE: massxpert.info ---
Info2: <<
Package: massxpert-%type_pkg[qt]
Version: 3.1.0
Revision: 1
Type: qt (mac)
Source: http://download.tuxfamily.org/massxpert/source/massxpert-%v.tar.gz
Source-MD5: 9b66e63e0bea2acb3ed6533b1a8ede1c
Source2: http://massxpert.org/userman/pdf/massxpert.pdf
Source2-MD5: 1e7bdc9fbf9a1b1e23df48c0590f13dc
Depends: <<
fontconfig2-shlibs (>= 2.8.0-4),
freetype219-shlibs (>= 2.3.12-1),
glib2-shlibs (>= 2.22.0-1),
libgettext8-shlibs,
libiconv,
libpng14-shlibs,
qt4-base-%type_pkg[qt]-qtcore-shlibs (>= 4.6.1-1),
qt4-base-%type_pkg[qt]-qtgui-shlibs (>= 4.6.1-1),
qt4-base-%type_pkg[qt]-qtsvg-shlibs (>= 4.6.1-1),
qt4-base-%type_pkg[qt]-qtxml-shlibs (>= 4.6.1-1),
(%type_pkg[qt] = x11) x11-shlibs
<<
BuildDepends: <<
cmake,
fink (>= 0.29.7-1),
fontconfig2-dev (>= 2.8.0-4),
freetype219 (>= 2.3.12-1),
glib2-dev (>= 2.22.0-1),
libgettext8-dev,
libiconv-dev,
libpng14,
qt4-base-%type_pkg[qt] (>= 4.6.1-1),
(%type_pkg[qt] = x11) x11-dev
<<
Conflicts: massxpert-mac, massxpert-x11
Replaces: massxpert-mac, massxpert-x11
PatchFile: massxpert.patch
PatchFile-MD5: 0627d543ebf79719269280437571e4cf
Maintainer: None <[email protected]>
Homepage: http://www.massxpert.org
License: GPL
# GPL v3, actually
Description: Mass spectrometric package, uses Qt4
GCC: 4.0
#SetLDFLAGS: -Wl,-framework,CoreFoundation
CompileScript: <<
#!/bin/sh -ev
export PATH=%p/lib/qt4-%type_pkg[qt]/bin:$PATH
export PKG_CONFIG_PATH="%p/lib/fontconfig2/lib/pkgconfig:$PKG_CONFIG_PATH"
%p/bin/cmake \
--debug-output -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
-DCMAKE_INSTALL_PREFIX:PATH=%p \
-DCMAKE_INCLUDE_PATH:PATH=%p/include \
-DCMAKE_LIBRARY_PATH:PATH=%p/lib \
-DCMAKE_OSX_DEPLOYMENT_TARGET:STRING="" \
-DCMAKE_OSX_SYSROOT:PATH="/" \
-DPEDANTIC=false \
.
### -DPEDANTIC turns of -Werror, which is fatal with qt4-4.7.3 on Lion.
# patch three link.txt files after cmake to create a bundle instead of dynamic
libraries
perl -pi -e "s,shared,bundle,g"
plugins-src/massListSorterPlugin/CMakeFiles/massListSorterPlugin.dir/link.txt
perl -pi -e "s,shared,bundle,g"
plugins-src/numeralsLocaleConverterPlugin/CMakeFiles/numeralsLocaleConverterPlugin.dir/link.txt
perl -pi -e "s,shared,bundle,g"
plugins-src/seqToolsPlugin/CMakeFiles/seqToolsPlugin.dir/link.txt
make
<<
AppBundles: gui/massXpert.app
DocFiles: COPYING TODO ../massxpert.pdf
DescDetail: <<
The massXpert project aims at providing (bio)chemists with
a software package allowing the following:
* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each
monomer and monomer chemical modification;
* Polymer sequence chemical/enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Simulation of isotopic patterns for any chemical formula.
<<
DescPackaging: <<
Previous maintainer: Jack Fink <[email protected]>
Koen van der Drift <[email protected]>
<<
<<
--- NEW FILE: massxpert.patch ---
diff -Nurd massxpert-2.3.5/gui/CMakeLists.txt
massxpert-2.3.5-patched/gui/CMakeLists.txt
--- massxpert-2.3.5/gui/CMakeLists.txt 2010-04-29 08:21:07.000000000 -0400
+++ massxpert-2.3.5-patched/gui/CMakeLists.txt 2010-05-09 19:32:47.000000000
-0400
@@ -233,19 +233,19 @@
EXEC_PROGRAM ("cp ${CMAKE_CURRENT_SOURCE_DIR}/images/massXpert.icns
${CMAKE_CURRENT_BINARY_DIR}/massXpert.app/Contents/Resources")
# We want to build universal binaries
-SET (CMAKE_OSX_ARCHITECTURES "ppc;i386"
- CACHE STRING "Build architectures for OSX" FORCE)
+#SET (CMAKE_OSX_ARCHITECTURES "ppc;i386"
+# CACHE STRING "Build architectures for OSX" FORCE)
# That can be deployed on older system
# (Qt 4.4.0 is available starting at 10.3.9)
-SET (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -mmacosx-version-min=10.3"
+SET (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -mmacosx-version-min=10.4"
CACHE STRING "Flags used by the compiler during all build types." FORCE)
SET (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fvisibility-inlines-hidden"
CACHE STRING "Flags used by the compiler during all build types." FORCE)
-SET (CMAKE_OSX_SYSROOT "/Developer/SDKs/MacOSX10.4u.sdk"
- CACHE STRING "MacOSX10.4u.sdk." FORCE)
+#SET (CMAKE_OSX_SYSROOT "/Developer/SDKs/MacOSX10.4u.sdk"
+# CACHE STRING "MacOSX10.4u.sdk." FORCE)
SET_SOURCE_FILES_PROPERTIES (application.qrc ${TARGET}_fr.qm
PROPERTIES MACOSX_BUNDLE_LOCATION Resources)
------------------------------------------------------------------------------
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