Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci
In directory vz-cvs-3.sog:/tmp/cvs-serv9955/stable/main/finkinfo/sci
Added Files:
arpack.info arpack.patch fltk-backend-oct-3.2.4.info
fltk-backend.patch metis.info qhull6.info qhull6.patch
qrupdate.info suitesparse-metis.info suitesparse-metis.patch
Log Message:
Finish up moving Octave deps to 10.4/stable
--- NEW FILE: arpack.patch ---
diff -Nurd ARPACK/ARmake.inc ARPACK.patched/ARmake.inc
--- ARPACK/ARmake.inc 1996-04-26 15:12:57.000000000 -0400
+++ ARPACK.patched/ARmake.inc 2011-09-15 11:32:22.000000000 -0400
@@ -34,6 +34,11 @@
#
PLAT = SUN4
#
+# The communication library ( need for parallel library only )
+# Current availible platforms are: BLACS or MPI
+#
+COMMLIB = MPI
+#
# %------------------------------------------------------%
# | The directories to find the various pieces of ARPACK |
# %------------------------------------------------------%
@@ -42,6 +47,8 @@
LAPACKdir = $(home)/LAPACK
UTILdir = $(home)/UTIL
SRCdir = $(home)/SRC
+PSRCdir = $(home)/PARPACK/SRC/$(COMMLIB)
+PUTILdir = $(home)/PARPACK/UTIL/$(COMMLIB)
#
DIRS = $(BLASdir) $(LAPACKdir) $(UTILdir) $(SRCdir)
#
@@ -51,17 +58,22 @@
# | NOTE: ARPACK assumes the use of LAPACK version 2 codes. |
# %-------------------------------------------------------------------%
#
-#DIRS = $(UTILdir) $(SRCdir)
+DIRS = $(UTILdir) $(SRCdir)
#
# %---------------------------------------------------%
# | The name of the libraries to be created/linked to |
# %---------------------------------------------------%
#
-ARPACKLIB = $(home)/libarpack_$(PLAT).a
-LAPACKLIB =
-BLASLIB =
+ARPACKLIB = $(home)/libarpack.a
+ARPACKDYLIB = $(home)/libarpack.dylib
+PARPACKLIB = $(home)/libparpack.a
+LAPACKLIB = @LAPACKLIB@
+BLASLIB = @BLASLIB@
#
ALIBS = $(ARPACKLIB) $(LAPACKLIB) $(BLASLIB)
+MPILIBS =
+PLIBS = $(PARPACKLIB) $(ALIBS) $(MPILIBS)
+
#
#
# %---------------------------------------------------------%
@@ -91,9 +103,9 @@
# | Command to build .o files from .f files. |
# %-------------------------------------------%
#
-.f.o:
- @$(ECHO) Making $@ from $<
- @$(FC) -c $(FFLAGS) $<
+#.f.o:
+# @$(ECHO) Making $@ from $<
+# @$(FC) -c $(FFLAGS) $<
#
# %-----------------------------------------%
# | Various compilation programs and flags. |
@@ -101,10 +113,10 @@
# | for your system. |
# %-----------------------------------------%
#
-FC = f77
-FFLAGS = -O -cg89
+FC = FINKPREFIX/bin/gfortran-fsf-4.6
+FFLAGS = -O -fPIC -single_module @FF2C@
-LDFLAGS =
+LDFLAGS = @LDFLAGS@
CD = cd
ECHO = echo
@@ -112,7 +124,7 @@
LN = ln
LNFLAGS = -s
-MAKE = /bin/make
+MAKE = make
RM = rm
RMFLAGS = -f
diff -Nurd ARPACK/UTIL/second.f ARPACK.patched/UTIL/second.f
--- ARPACK/UTIL/second.f 1995-10-02 14:56:44.000000000 -0400
+++ ARPACK.patched/UTIL/second.f 2011-09-15 10:53:32.000000000 -0400
@@ -20,15 +20,15 @@
REAL TARRAY( 2 )
* ..
* .. External Functions ..
- REAL ETIME
- EXTERNAL ETIME
+* REAL ETIME
+* EXTERNAL ETIME
* ..
* .. Executable Statements ..
*
- T1 = ETIME( TARRAY )
- T = TARRAY( 1 )
-
+* T1 = ETIME( TARRAY )
+* T = TARRAY( 1 )
+ T = 1
RETURN
*
* End of SECOND
diff -Nurd ARPACK/Makefile ARPACK.patched/Makefile
--- ARPACK/Makefile 1996-09-24 10:55:31.000000000 -0400
+++ ARPACK.patched/Makefile 2011-09-15 10:53:32.000000000 -0400
@@ -64,6 +64,12 @@
done );
$(RANLIB) $(ARPACKLIB)
+arpackdylib: arpacklib tmp
+ ( cd tmp; ar -x $(ARPACKLIB) )
+ ( $(FC) $(FFLAGS) $(LDFLAGS) -dynamiclib -install_name
FINKPREFIX/lib/libarpack.0.dylib -compatibility_version 1.1.0 -current_version
1.1.0 -o $(ARPACKDYLIB) @LAPACKLINK@ @BLASLINK@ -Wl,@LOAD@,$(ARPACKLIB) )
+
+tmp:
+ ( mkdir tmp )
cleantest:
cleanlib:
--- NEW FILE: qhull6.info ---
Package: qhull6
Version: 2011.1
Revision: 1
Description: Calculate convex hulls and related structures
License: BSD
Maintainer: Alexander Hansen <[email protected]>
DescDetail: <<
Qhull computes convex hulls, Delaunay triangulations, halfspace
intersections about a point, Voronoi diagrams, furthest-site
Delaunay triangulations, and furthest-site Voronoi diagrams.
It runs in 2-d, 3-d, 4-d, and higher dimensions. It implements
the Quickhull algorithm for computing the convex hull. Qhull
handles roundoff errors from floating point arithmetic. It
computes volumes, surface areas, and approximations to the
convex hull.
<<
DescUsage: <<
This package contains the executables, manpages, and other documentation.
<<
DescPort: <<
Upstream doesn't appear to grok OS X, so we handcraft the dylib's
install_name.
<<
DescPackaging: <<
The prior static-only qhull package was maintained by Stefan Langerman
<[email protected]>.
<<
Source: http://www.qhull.org/download/qhull-%v-src.tgz
Source-MD5: a65061cf2a6e6581182f4df0f3667a8e
SourceDirectory: qhull-%v
BuildDepends: fink (>= 0.24.12-1)
Depends: %N-shlibs (= %v-%r )
Conflicts: qhull
Replaces: qhull
PatchFile: %n.patch
PatchFile-MD5: 8498f1f42b4aa2c2a47fd70353acb293
PatchScript: <<
sed -e 's,@INSTPREFIX@,%i,' -e 's,@FINKPREFIX@,%p,' %{PatchFile} | patch -p1
sed -i.orig -e 's|-Wno-sign-conversion||' Makefile
# fangism: g++-4.0 needs qualifier on friend member class, even if
forward-declared
sed -i.orig -e
'/friend.*class.*const_iterator;/s|const_iterator|QhullPointSet::&|;'
src/libqhullcpp/QhullPointSet.h
<<
GCC: 4.0
CompileScript: make
InfoTest: <<
TestScript: make test || exit 2
<<
InstallScript: <<
#!/bin/sh -ev
make -j1 install
pushd %i/lib
ln -sf lib%N.2.0.dylib lib%N.dylib
<<
DocFiles: Announce.txt COPYING.txt README.txt REGISTER.txt index.htm
Homepage: http://www.qhull.org/
SplitOff: <<
Package: %N-shlibs
Files: lib/lib%N.2.0.dylib
Shlibs: %p/lib/lib%N.2.0.dylib 0.0.0 %n (>= 2011.1-1)
DocFiles: Announce.txt COPYING.txt README.txt REGISTER.txt
DescUsage: <<
This package contains the shared library.
<<
<<
SplitOff2: <<
Package: %N-dev
BuildDependsOnly: true
Depends: %N-shlibs (= %v-%r)
Conflicts: qhull
Replaces: qhull
Files: <<
include
lib
<<
DocFiles: Announce.txt COPYING.txt README.txt REGISTER.txt
DescUsage: <<
This package contains the header files, static libraries, and the
unversioned dylib.
<<
<<
--- NEW FILE: fltk-backend.patch ---
diff -Nurd -x'*~' octave-@[email protected]/src/DLD-FUNCTIONS/__glpk__.cc
octave-@OCTVERSION@/src/DLD-FUNCTIONS/__glpk__.cc
--- octave-@[email protected]/src/DLD-FUNCTIONS/__glpk__.cc 2009-01-16
01:46:23.000000000 -0500
+++ octave-@OCTVERSION@/src/DLD-FUNCTIONS/__glpk__.cc 2010-10-15
17:50:25.000000000 -0400
@@ -59,8 +59,20 @@
#else
-void _glp_lib_print_hook (int (*func)(void *info, char *buf), void *info);
-void _glp_lib_fault_hook (int (*func)(void *info, char *buf), void *info);
+void _glp_lib_print_hook (int (*func)(void *info, char *buf), void *info)
+{ /* stolen from glpk-4.26 */
+ int (*hook)(void *, const char *) = (int(*)(void *, const char *))
+ (func);
+ glp_term_hook(hook, info);
+ return;
+}
+
+void _glp_lib_fault_hook (int (*func)(void *info, char *buf), void *info)
+{ /* stolen from glpk-4.26 */
+ assert(func == func);
+ assert(info == info);
+ return;
+}
#endif
}
diff -Nurd octave-3.2.4/src/Makefile.in octave-3.2.4.patched/src/Makefile.in
--- octave-3.2.4/src/Makefile.in 2009-06-03 08:32:49.000000000 -0400
+++ octave-3.2.4.patched/src/Makefile.in 2011-09-05 13:35:11.000000000
-0400
@@ -63,21 +63,7 @@
OPT_IN := $(addprefix ../liboctave/, $(addsuffix .in, $(OPT_BASE)))
OPT_INC := $(addprefix ../liboctave/, $(addsuffix .h, $(OPT_BASE)))
-DLD_XSRC := amd.cc balance.cc besselj.cc betainc.cc bsxfun.cc \
- cellfun.cc chol.cc ccolamd.cc colamd.cc colloc.cc \
- conv2.cc convhulln.cc daspk.cc dasrt.cc dassl.cc det.cc \
- dispatch.cc dlmread.cc dmperm.cc eig.cc eigs.cc fft.cc \
- fft2.cc fftn.cc fftw.cc filter.cc find.cc fltk_backend.cc \
- gammainc.cc gcd.cc getgrent.cc getpwent.cc getrusage.cc \
- givens.cc hess.cc hex2num.cc inv.cc kron.cc lookup.cc \
- lsode.cc lu.cc luinc.cc matrix_type.cc max.cc md5sum.cc \
- pinv.cc qr.cc quad.cc qz.cc rand.cc rcond.cc regexp.cc \
- schur.cc sparse.cc spparms.cc sqrtm.cc svd.cc syl.cc \
- symrcm.cc symbfact.cc time.cc tsearch.cc typecast.cc \
- urlwrite.cc __contourc__.cc __delaunayn__.cc \
- __dsearchn__.cc __glpk__.cc __lin_interpn__.cc \
- __magick_read__.cc __pchip_deriv__.cc __qp__.cc \
- __voronoi__.cc __convn__.cc
+DLD_XSRC := fltk_backend.cc
DLD_SRC := $(addprefix DLD-FUNCTIONS/, $(DLD_XSRC))
--- NEW FILE: metis.info ---
Package: metis
Version: 4.0.3
Revision: 1
Description: Graph partitioning and matrix ordering
DescDetail: <<
METIS is a set of serial programs for partitioning graphs, partitioning
finite element meshes, and producing fill reducing orderings for sparse
matrices. The algorithms implemented in METIS are based on the multilevel
recursive-bisection, multilevel k-way, and multi-constraint partitioning
schemes developed in the Karypis Lab at the University of Minnesota.
METIS's key features are the following:
Provides high quality partitions!
Experiments on a large number of graphs arising in various domains including
finite element methods, linear programming, VLSI, and transportation show that
METIS produces partitions that are consistently better than those produced by
other widely used algorithms. The partitions produced by METIS are
consistently 10% to 50% better than those produced by spectral partitioning
algorithms.
It is extremely fast!
Experiments on a wide range of graphs has shown that METIS is one to two
orders of magnitude faster than other widely used partitioning algorithms.
Graphs with over 1,000,000 vertices can be partitioned in 256 parts in a few
seconds on current generation workstations and PCs.
Produces low fill orderings!
The fill-reducing orderings produced by METIS are significantly better than
those produced by other widely used algorithms including multiple minimum
degree. For many classes of problems arising in scientific computations and
linear programming, METIS is able to reduce the storage and computational
requirements of sparse matrix factorization, by up to an order of magnitude.
Moreover, unlike multiple minimum degree, the elimination trees produced by
METIS are suitable for parallel direct factorization. Furthermore, METIS is
able to compute these orderings very fast. Matrices with over 200,000 rows can
be reordered in just a few seconds on current generation workstations and PCs.
<<
License: OSI-Approved
Maintainer: Alexander Hansen <[email protected]>
Homepage: http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
CustomMirror: <<
nam-US: http://glaros.dtc.umn.edu/gkhome/fetch/sw/%n/OLD
Primary: http://glaros.dtc.umn.edu/gkhome/fetch/sw/%n
<<
Source: mirror:custom:/%n-%v.tar.gz
Source-MD5: d3848b454532ef18dc83e4fb160d1e10
CompileScript: <<
#!/bin/sh -ev
pushd Lib
make
popd
cd Programs
make
<<
InfoTest: <<
TestScript: (cd Test ; make ) || exit 2
<<
InstallScript: <<
#!/bin/sh -ev
mkdir -p %i/bin
cp graphchk kmetis mesh2dual mesh2nodal oemetis onmetis partdmesh
partnmesh pmetis %i/bin
mkdir -p %i/lib
cp libmetis.a %i/lib
mkdir -p %i/include
cp Lib/*.h %i/include
<<
BuildDependsOnly: false
DocFiles: LICENSE VERSION CHANGES Graphs Doc
--- NEW FILE: qhull6.patch ---
diff -Nurd qhull-2011.1/Makefile qhull-2011.1.patched/Makefile
--- qhull-2011.1/Makefile 2011-05-14 14:00:48.000000000 -0400
+++ qhull-2011.1.patched/Makefile 2011-08-25 12:07:26.000000000 -0400
@@ -64,12 +64,12 @@
# You may build the qhull programs without using a library
# make qhullx
-DESTDIR = /usr/local
+DESTDIR = @INSTPREFIX@
BINDIR = $(DESTDIR)/bin
-DOCDIR = $(DESTDIR)/share/doc/packages/qhull
+DOCDIR = $(DESTDIR)/share/doc/qhull
INCDIR = $(DESTDIR)/include
LIBDIR = $(DESTDIR)/lib
-MANDIR = $(DESTDIR)/man/man1
+MANDIR = $(DESTDIR)/share/man/man1
# if you do not have enscript, try a2ps or just use lpr. The files are text.
PRINTMAN = enscript -2rl
@@ -80,16 +80,16 @@
#for Gnu's gcc compiler, -O2 for optimization, -g for debugging
# -fno-strict-aliasing not needed for gcc 4.4+ (segfault in qset.c)
CC = gcc
-CC_OPTS1 = -O2 -fPIC -ansi -fno-strict-aliasing -Isrc/libqhull $(CC_WARNINGS)
+CC_OPTS1 = -O2 -fPIC -ansi -fno-common -fno-strict-aliasing -Isrc/libqhull
$(CC_WARNINGS)
CXX = g++
# libqhullcpp must be before libqhull
CXX_OPTS1 = -O2 -Dqh_QHpointer -Isrc/ -Isrc/libqhullcpp -Isrc/libqhull
$(CXX_WARNINGS)
# for shared library link
-CC_OPTS3 =
+CC_OPTS3 = -dynamiclib -install_name @FINKPREFIX@/lib/libqhull6.2.0.dylib
# Define qhull_VERSION in CMakeLists.txt, Makefile, qhull-exports.def, and
qhull-warn.pri
qhull_VERSION_MAJOR=6
-SO = so.6.2.0
+SO = 2.0.dylib
# On MinGW,
# make SO=dll
@@ -432,7 +432,7 @@
lib/libqhull$(qhull_VERSION_MAJOR).$(SO): $(LIBQHULLSP_OBJS)
$(CC) -shared -o $@ $(CC_OPTS3) $^
- cd lib && ln -f -s libqhull$(qhull_VERSION_MAJOR).$(SO)
libqhull$(qhull_VERSION_MAJOR).so
+ cd lib && ln -f -s libqhull$(qhull_VERSION_MAJOR).$(SO)
libqhull$(qhull_VERSION_MAJOR).dylib
# don't use ../qconvex. Does not work on Red Hat Linux
bin/qconvex: src/qconvex/qconvex.o lib/libqhullstatic.a
@@ -457,7 +457,7 @@
bin/user_eg: src/user_eg/user_eg.c lib/libqhull$(qhull_VERSION_MAJOR).$(SO)
echo -e '\n== If user_eg fails to link, switch to -lqhullstatic_p.\n==
On MinGW/Cygwin, use "make SO=dll"'
echo -e "\\n== and copy lib/libqhull$(qhull_VERSION_MAJOR).$(SO) to
bin\\n\\n"
- $(CC) -o $@ $< -Dqh_QHpointer $(CC_OPTS1) $(CC_OPTS3) -Llib
-lqhull$(qhull_VERSION_MAJOR) -lm
+ $(CC) -o $@ $< -Dqh_QHpointer $(CC_OPTS1) -Llib
-lqhull$(qhull_VERSION_MAJOR) -lm
bin/user_eg2: src/user_eg2/user_eg2.o lib/libqhullstatic.a
$(CC) -o $@ $< $(CC_OPTS2) -Llib -lqhullstatic -lm
--- NEW FILE: arpack.info ---
Info2: <<
Package: arpack%type_pkg[-atlas]
Version: 96patched
Revision: 6
Type: -atlas (boolean)
Maintainer: Alexander Hansen <[email protected]>
Description: Solve large scale eigenvalue problems
DescDetail: <<
ARPACK is a collection of Fortran77 subroutines designed to solve large scale
eigenvalue problems.
<<
DescUsage: <<
This package contains the header, static libraries, Fortran examples, and
documentation.
<<
BuildDependsOnly: true
Homepage: http://www.caam.rice.edu/software/ARPACK
License: BSD
Source: http://www.caam.rice.edu/software/ARPACK/SRC/arpack96.tar.gz
Source2: http://www.caam.rice.edu/software/ARPACK/SRC/patch.tar.gz
Source2Rename: arpack-patch.tar.gz
Source-MD5: fffaa970198b285676f4156cebc8626e
Source2-MD5: 14830d758f195f272b8594a493501fa2
SourceDirectory: ARPACK
BuildDepends: <<
(%type_raw[-atlas] != .) atlas,
fink (>=0.30.0),
gcc46-compiler
<<
Depends: %N-shlibs (= %v-%r )
Conflicts: %{Ni}, %{Ni}-atlas
Replaces: %{Ni}, %{Ni}-atlas
PatchFile: %{ni}.patch
PatchFile-MD5:7f2b7e1cc58e18f9705c784a680e71ef
PatchScript: <<
#!/bin/sh -ev
sed -e 's|FINKPREFIX|%p|g' %{PatchFile} | patch -p1
perl -pi -e 's|\$\(HOME\)/ARPACK|%b|' ARmake.inc
# set appropriate libraries for variant
if [ "%type_raw[-atlas]" = "-atlas" ]
then
sed -i.bak -e 's|@FF2C@||' \
-e
's|@LAPACKLIB@|%p/lib/liblapack.dylib|' \
-e
's|@BLASLIB@|%p/lib/libf77blas.dylib|' ARmake.inc
sed -i.bak -e 's|@LAPACKLINK@|%p/lib/liblapack.dylib|' \
-e
's|@BLASLINK@|%p/lib/libf77blas.dylib|' Makefile
else
sed -i.bak -e 's|@FF2C@|-ff2c|' \
-e 's|@LAPACKLIB@|-framework
Accelerate|' \
-e 's|@BLASLIB@||' ARmake.inc
sed -i.bak -e
's|@LAPACKLINK@|/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib|'
\
-e
's|@BLASLINK@|/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib|'
\
Makefile
fi
# set LDFLAGS appropriately
if [ `uname -r | cut -f1 -d.` -ge 9 ]
then
sed -i.bak -e 's|@LDFLAGS@|-Wl,-dead_strip_dylibs|' ARmake.inc
else
sed -i.bak -e 's|@LDFLAGS@||' ARmake.inc
fi
# use OS-appropriate methods to make dylib
if [ `uname -r | cut -f1 -d.` -le 9 ]
then
sed -i.bak -e 's|@LOAD@|-all_load|' Makefile
else
sed -i.bak -e 's|@LOAD@|-force_load|' Makefile
fi
<<
UseMaxBuildJobs: false
CompileScript: <<
make all
make arpackdylib
<<
InstallScript: <<
#!/bin/sh -ev
install -d -v %i/lib
install -m 644 -v libarpack.a %i/lib
ranlib %i/lib/libarpack.a
mv libarpack.dylib libarpack.0.dylib
install -m 644 -v libarpack.0.dylib %i/lib
pushd %i/lib
ln -s libarpack.0.dylib libarpack.dylib
popd
install -d -v %i/share
install -d -v %i/share/%n
cp -r -v EXAMPLES %i/share/%n
<<
DocFiles: DOCUMENTS
DescPackaging: <<
Borrowed liberally from Macports.
Needs a gfortran; I've arbitrarily chosen gcc46, as it's the
lowest-versioned one available on 10.7.
Needs -ff2c when using Accelerate.framework, but not when using
ATLAS.
<<
DescPort: <<
Dynamic library originally courtesy of Ben Abbot. I've tweaked it to
have a nonzero compatibility_version and current_version. Additional
tweaks thanks to J-F Mertens and Peter O'Gorman
Fortran files are built at -O0 to avoid runtime crashes--thanks to
Martin Costabel for bringing this up.
<<
Splitoff: <<
Package: %N-shlibs
Files: lib/lib%{Ni}.0.dylib
Shlibs: %p/lib/lib%{Ni}.0.dylib 1.1.0 %n (>=0.96patched-6)
Depends: <<
(%type_raw[-atlas] != .) atlas-shlibs,
gcc46-shlibs
<<
Conflicts: %{Ni}-shlibs, %{Ni}-atlas-shlibs
Replaces: %{Ni}-shlibs, %{Ni}-atlas-shlibs
DescDetail: <<
This package contains a dynamic library.
<<
DocFiles: DOCUMENTS/README
<<
<<
--- NEW FILE: qrupdate.info ---
Info2: <<
Package: qrupdate%type_pkg[-atlas]
Version: 1.1.1
Revision: 5
Type: -atlas (boolean)
Source: mirror:sourceforge:%{Ni}/1.1/%{Ni}-%v.tar.gz
Source-MD5: 7782c7ee6c234e56a72d6b86c1856fa0
Description: QR and Cholesky decomposition library
DescDetail: <<
qrupdate is a Fortran library for fast updates of QR, Cholesky decompositions.
<<
DescUsage: <<
This package contains a static library, header, and unversioned dylib.
<<
DescPackaging: <<
Patch out hardcoded /usr/local.
Uses GNU 'install -D', so we patch that out and use 'mkdir -p' first to avoid
BuildDepends: coreutils-default.
Use -ff2c on the non-ATLAS variant to be compatible with Accelerate.
<<
Maintainer: Alexander Hansen <[email protected]>
License: GPL
BuildDepends: gcc46-compiler
Depends: %N-shlibs (=%v-%r)
BuildDependsOnly: true
Conflicts: qrupdate, qrupdate-atlas
Replaces: qrupdate, qrupdate-atlas
PatchScript: <<
#!/bin/sh -ev
if [ `uname -r | cut -f1 -d.` -ge 9 ]
then
LDFLAGS="-Wl,-dead_strip_dylibs"
else LDFLAGS=""
fi
sed -i.orig -e 's|/usr/local|%p|g' \
-e '/FC/s|gfortran|&-fsf-4.6|' Makeconf
if [ "%type_pkg[-atlas]" = "" ]
then
sed -i.orig2 \
-e '/FFLAGS/s|-O3|-ff2c -g &|' \
-e 's|-lblas||' \
-e 's|-llapack||' \
-e "/BLAS=/i\
LDFLAGS=$LDFLAGS -framework Accelerate" Makeconf
else
sed -i.orig2 \
-e 's,lblas,lf77blas,' \
-e "/BLAS=/i\
LDFLAGS=$LDFLAGS -L%p/lib" Makeconf
fi
sed -i.orig -e 's|install -D|install|g' src/Makefile
# recursive parallel Makefiles please -- fangism
sed -i.orig -e '/make -C/s|make|+&|' Makefile
sed -i.orig -e '/FFLAGS.*LIBS/s|(FFLAGS)|& $(LDFLAGS)|' test/Makefile
<<
CompileScript: <<
make solib && make lib
<<
InfoTest: <<
TestScript: make test || exit 2
<<
InstallScript: <<
mkdir -p %i/lib
make -j1 install-shlib install-staticlib DESTDIR=%d
<<
DocFiles: COPYING README
SplitOff: <<
Package: %N-shlibs
Depends: gcc46-shlibs
Conflicts: qrupdate-atlas-shlibs, qrupdate-shlibs
Replaces: qrupdate-atlas-shlibs, qrupdate-shlibs
Files: lib/lib%{Ni}.1*.dylib
DocFiles: COPYING README
Shlibs: %p/lib/lib%{Ni}.1.dylib 0.0.0 %n (>= 1.1.1-1)
DescUsage: This package contains a shared library.
<<
<<
--- NEW FILE: suitesparse-metis.patch ---
diff -urN -x .DS_Store originals/SuiteSparse/KLU/Include/klu_internal.h
SuiteSparse/KLU/Include/klu_internal.h
--- originals/SuiteSparse/KLU/Include/klu_internal.h 2007-05-04
17:00:06.000000000 -0400
+++ SuiteSparse/KLU/Include/klu_internal.h 2008-03-22 20:19:59.000000000
-0400
@@ -9,7 +9,7 @@
#include "klu.h"
#include "btf.h"
-#include "klu_version.h"
+/*#include "klu_version.h"*/
/* ==========================================================================
*/
/* make sure debugging and printing is turned off */
@@ -36,6 +36,8 @@
#include <limits.h>
#include <stdlib.h>
#include <math.h>
+/* moved klu_version.h after math.h to circumvent compile error on ppc */
+#include "klu_version.h"
#undef ASSERT
#ifndef NDEBUG
diff -Nurd SuiteSparse/UFconfig/UFconfig.mk
SuiteSparse.patched//UFconfig/UFconfig.mk
--- SuiteSparse/UFconfig/UFconfig.mk 2011-05-10 16:47:15.000000000 -0400
+++ SuiteSparse.patched//UFconfig/UFconfig.mk 2011-08-24 15:14:47.000000000
-0400
@@ -33,8 +33,8 @@
# C compiler and compiler flags: These will normally not give you optimal
# performance. You should select the optimization parameters that are best
# for your system. On Linux, use "CFLAGS = -O3 -fexceptions" for example.
-CC = cc
-CFLAGS = -O3 -fexceptions
+#CC = cc
+#CFLAGS = -O3 -fexceptions
# C++ compiler (also uses CFLAGS)
CPLUSPLUS = g++
@@ -54,7 +54,7 @@
F77LIB =
# C and Fortran libraries
-LIB = -lm
+#LIB = -lm
# For compiling MATLAB mexFunctions (MATLAB 7.5 or later)
MEX = mex -O -largeArrayDims -lmwlapack -lmwblas
@@ -91,8 +91,8 @@
# naming the BLAS and LAPACK library (*.a or *.so) files.
# This is probably slow ... it might connect to the Standard Reference BLAS:
-BLAS = -lblas -lgfortran
-LAPACK = -llapack
+#BLAS = -lblas -lgfortran
+#LAPACK = -llapack
# NOTE: this next option for the "Goto BLAS" has nothing to do with a "goto"
# statement. Rather, the Goto BLAS is written by Dr. Kazushige Goto.
@@ -132,13 +132,13 @@
# The path is relative to where it is used, in CHOLMOD/Lib, CHOLMOD/MATLAB,
etc.
# You may wish to use an absolute path. METIS is optional. Compile
# CHOLMOD with -DNPARTITION if you do not wish to use METIS.
-METIS_PATH = ../../metis-4.0
-METIS = ../../metis-4.0/libmetis.a
+#METIS_PATH = ../../metis-4.0
+#METIS = ../../metis-4.0/libmetis.a
# If you use CHOLMOD_CONFIG = -DNPARTITION then you must use the following
# options:
-# METIS_PATH =
-# METIS =
+METIS_PATH = @METISPREFIX@
+METIS = @METISPREFIX@/lib/libmetis.a
#------------------------------------------------------------------------------
# UMFPACK configuration:
@@ -194,7 +194,7 @@
# -DNSUNPERF for Solaris only. If defined, do not use the Sun
# Performance Library
-CHOLMOD_CONFIG =
+CHOLMOD_CONFIG =
#------------------------------------------------------------------------------
# SuiteSparseQR configuration:
@@ -232,7 +232,7 @@
#------------------------------------------------------------------------------
# Using default compilers:
-# CC = gcc
+CC = gcc
# CFLAGS = -O3 -fexceptions
# alternatives:
@@ -286,10 +286,10 @@
# As recommended by macports, http://suitesparse.darwinports.com/
# I've tested them myself on Mac OSX 10.6.1 (Snow Leopard), on my MacBook Air.
-# F77 = gfortran
-# CFLAGS = -O3 -fno-common -no-cpp-precomp -fexceptions
-# BLAS = -framework Accelerate
-# LAPACK = -framework Accelerate
+F77 = gfortran
+CFLAGS = -O3 -fno-common -no-cpp-precomp -fexceptions
+BLAS = -framework Accelerate
+LAPACK = -framework Accelerate
# Using netlib.org LAPACK and BLAS compiled by gfortran, with and without
# optimzation:
--- NEW FILE: suitesparse-metis.info ---
Package: suitesparse-metis
Version: 3.6.1
Revision: 1
Source:
http://www.cise.ufl.edu/research/sparse/SuiteSparse/SuiteSparse-%v.tar.gz
Source-MD5: 88a44890e8f61cdbb844a76b7259d876
SourceDirectory: SuiteSparse
BuildDepends: fink (>= 0.24.12)
BuildConflicts: coreutils-default
Conflicts: suitesparse
Replaces: suitesparse
Depends: metis
PatchFile: %n.patch
PatchFile-MD5: 86e123887db5bcc19880b49fe4ffe2e6
PatchScript: <<
#!/bin/sh -ev
sed -e 's,@METISPREFIX@,%p,g' %{PatchFile} | patch -p1
sed -i.bak -e 's,^CFLAGS = -O,&3 -fstrict-aliasing,'
C{,X}Sparse/Lib/Makefile
sed -i -e 's,I$(METIS_PATH)/Lib,I$(METIS_PATH)/include,'
CHOLMOD/Lib/Makefile
sed -i -e 's|-no-cpp-precomp||g' ./UFconfig/UFconfig.mk
<<
# avoid race condidtion
UseMaxBuildJobs: false
CompileScript: <<
#! /bin/sh -ev
# Compile SuiteSparse with METIS.
export CHOLMOD_CONFIG=''
echo **** Start: Message from SuiteSparse CompileScript ****
echo CHOLMOD_CONFIG = $CHOLMOD_CONFIG
echo **** Stop: Message from SuiteSparse CompileScript ****
make default
<<
InstallScript: <<
#! /bin/sh -ev
install -d %i/lib
find . -name 'lib*.a' -exec install -m 644 \{\} %i/lib \;
rm %i/lib/libcsparse.a
ranlib %i/lib/lib*.a
install -d %i/include/suitesparse
install -p -m 644 \
`find . -name '*.h'|egrep -v
'^\./(CSparse/|CXSparse_n|UMFPACK/Source/)|/(MATLAB|Demo|Tcov)/|_(internal|version)\.h$'`
\
%i/include/suitesparse
for f in `ls -1 {,*/,CHOLMOD/*/}*.txt|egrep -v '_newfiles|MATLAB'|sed -e
's,^,./,' -e 's,/[^/]*$,,'|sort -u`
do install -d %i/share/doc/suitesparse/$f; install -p -m 644 $f/*.txt
%i/share/doc/suitesparse/$f; done
for f in `ls -1d */Doc|fgrep -v _newfiles|sed -e 's,/[^/]*$,,'`
do install -d %i/share/doc/suitesparse/$f; install -p -m 644 $f/Doc/*
%i/share/doc/suitesparse/$f; done
cd %i/share/doc/suitesparse
# replace duplicates by symlinks
for n in lesser gpl; do
l=`ls -1 {,*/}*/$n.txt`
target=`tail -n1<<<"$l"`
list=`sed -e '$d'<<<"$l"`
for f in $list; do g=`sed -e 's,[^/]\+,..,g' -e 's,\.\.$,,' <<<"$f"`;
ln -fs $g$target $f; done
done
# clean up
find . \( -name Makefile \
-o -name '*.bib' -o -name '*.tex' -o -name '*.stex' -o -name '*.sed*'
-o -name '*.awk' -o -name '*diff' -o -name '*proto' \
\) -exec rm \{\} \;
cd -
<<
Description: Suite of Sparse matrix packages
DescUsage: <<
This version of SuiteSparse uses the METIS libraries. Packages that link
against libcholmod.a from this one will also need to use -lmetis.
<<
License: GPL/LGPL
Maintainer: Alexander Hansen <[email protected]>
Homepage: http://www.cise.ufl.edu/research/sparse/SuiteSparse/
--- NEW FILE: fltk-backend-oct-3.2.4.info ---
Info2: <<
Package: fltk-backend-%type_pkg[ui]-oct%type_pkg[oct]
Type: ui (x11 aqua), oct(3.2.4)
Version: 3.2.4
Revision: 2
Maintainer: Alexander Hansen <[email protected]>
Description: Graphics backend for octave-%type_raw[oct]
DescDetail: <<
We build fltk-backend.oct separately to allow for variants that use Aqua and
X11. Install fltk-backend-aqua-oct%type_pkg[oct] if you want the Aqua
interface or fltk-backend-x11-oct%type_pkg[oct] if you want the X11 one.
<<
Source: mirror:gnu:octave/octave-%v.tar.gz
Source-MD5: 90c39fa9e241ad2e978bcee4682a2ba9
SourceDirectory: octave-%v
BuildDepends: <<
(%type_pkg[ui] = x11) fltk-x11,
(%type_pkg[ui] = x11) x11-dev,
(%type_pkg[ui] = aqua) fltk13-aqua,
arpack, glpk-dev, hdf5.7, readline5, libncurses5, fftw3 (>= 3.1.1-7),
libcurl4, libftgl2, qhull6-dev, qrupdate | qrupdate-atlas, flag-sort,
pcre, gcc46-compiler, suitesparse-metis, fink (>= 0.30.0), sed,
graphicsmagick-dev, freetype219, libftgl2
<<
Depends: <<
(%type_pkg[ui] = x11) fltk-x11-shlibs,
(%type_pkg[ui] = x11) x11,
(%type_pkg[ui] = aqua) fltk13-aqua-shlibs
<<
BuildConflicts: coot-dev, broken-gcc, lammpi-dev, fort77, 4ti2-dev,
imagemagick10-dev
GCC: 4.0
Conflicts: fltk-backend-aqua-oct%type_pkg[oct],
fltk-backend-x11-oct%type_pkg[oct]
Replaces: fltk-backend-aqua-oct%type_pkg[oct],
fltk-backend-x11-oct%type_pkg[oct]
UseMaxBuildJobs: false
PatchFile: fltk-backend.patch
PatchFile-MD5: 1df437597f67ce17b321534513e5946f
PatchScript: <<
#!/bin/sh -ev
sed -e 's/@OCTVERSION@/%v/g' %{PatchFile} | patch -p1
# fix lib name for qhull6
perl -pi -e 's|(qhull[/.])|lib\1|g ; s|lqhull|lqhull6|' configure
# wrong include dir for qhull6
for f in `grep -l -r "qhull_a\.h" src`
do sed -i.orig -e '/include/s|qhull/|lib&|' $f
done
# more patching by fangism
# silence some warnings
sed -i.orig -e '/ibasea/s|\*ibasea, ||' \
-e '/ibasea/s| ibasea =.*||' \
liboctave/oct-sort.cc
# should this accompany -D_THREAD_SAFE? in CFLAGS,CXXFLAGS
sed -i.orig '/#include.*Range\.h/i\
#define _REENTRANT' liboctave/lo-specfun.cc
# need size_t from <cstddef>
sed -i.orig -e '/#define octave_oct_alloc_h/a\
using std::size_t;' liboctave/oct-alloc.h
# needed by clang++, safe for g++: using-declaration as typedef
for f in liboctave/DiagArray2.h liboctave/intNDArray.h
do sed -i.orig -e '/using.*element_type;/s|using|& typename|' $f
done
# missing qualifier to dependent-name member-function
sed -i.orig -e '/truncate_int/s|\(return\) \(truncate_int\)|\1
octave_int_base<T>::\2|' liboctave/oct-inttypes.h
perl -pi -e 's/scripts doc/scripts/; s/INSTALL.OCTAVE//' Makefile
<<
SetCC: flag-sort -r gcc
SetCXX: flag-sort -r g++
SetLDFLAGS: -Wl,-dead_strip_dylibs
SetLIBS: -lGraphicsMagick -lmetis
ConfigureParams: <<
F77=%p/bin/gfortran-fsf-4.6 --host=%m-apple-darwin
--build=%m-apple-darwin \
--infodir='${prefix}/share/info' --mandir='${prefix}/share/man'
--libexecdir='${prefix}/lib' \
--enable-shared --enable-dl --without-mpi --with-hdf5 --with-fftw \
(%type_pkg[ui] = x11 ) --with-x \
(%type_pkg[ui] = x11 ) --x-libraries=/usr/X11/lib \
(%type_pkg[ui] = x11 ) --x-includes=/usr/X11/include \
(%type_pkg[ui] = x11 ) --without-framework-carbon \
(%type_pkg[ui] = aqua ) --without-x \
(%type_pkg[ui] = aqua ) --with-framework-carbon \
--disable-static
<<
CompileScript: <<
#!/bin/sh -ev
export CFLAGS='-O3 -MD'
export CXXFLAGS='-O3 -MD'
export FFLAGS='-O3'
a='--with-lapack=-Wl,-framework,Accelerate,-dylib_file,/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib:/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
--with-blas=-Wl,-framework,Accelerate,-dylib_file,/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib:/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib'
FLIBDIR="%p/lib/gcc4.6/lib"
./configure FLIBS="${FLIBDIR}/libgfortran.dylib" %c $a
#make
pushd libcruft
make all
popd
pushd liboctave
make all
popd
pushd src
make all
<<
InstallScript: <<
mkdir -p %i/lib/octave/%type_raw[oct]/oct/%m-apple-darwin
cp src/fltk_backend.oct %i/lib/octave/%type_raw[oct]/oct/%m-apple-darwin/
<<
DocFiles: COPYING
Homepage: http://www.octave.org/
License: GPL
DescPackaging: <<
Currently we build all of octave and then only install
fltk_backend.oct.
<<
<<
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