First of all, I apologize for this. I had noticed this nonfatal error also since the 10.2.3 upgrade but had no idea that I was the cause of it. It was not happening, at least to me, in 10.2.2 and below.
The quick fix is to remove the file %p/etc/profile.d/ccp4.sh where %p :== /sw or your equivalent.
This file has a one line command in it to run another script, distributed by ccp4, that sets up the environment in bash and sh.
The line in mine is
. /sw/share/xtal/ccp4-4.2.2/include/ccp4.setup-sh
This seems to work fine interactively, so I have been unable to figure out what the problem is and will have to inquire upstream. Meanwhile my proposed fix is to delete the above file by overwriting it with a blank dummy file, unless someone has a better idea.
For anyone who has installed this, you have probably noticed the installation takes about 3 hours, so doing a whole reinstall to delete that one file isn't an attractive option.
Again, I apologize for this.
Bill Scott
On Tuesday, January 7, 2003, at 06:55 PM, Ben Hines wrote:
Figured it out. This is caused by the ccp4 pacakge. It sets something bad in its profile.d scripts. Not sure what, exactly, it would be good if the maintainer could figure out what variable breaks fink.
-Ben
On Tuesday, January 7, 2003, at 06:41 PM, Ben Hines wrote:
I'm getting this warning too, now, with fink 0.11.1-10 installed. It may have been caused by the new X11, but that seems strange.
....
ccache-2.1/unify.c
Odd number of elements in hash assignment at /sw/lib/perl5/Fink/PkgVersion.pm line 1748.
Use of uninitialized value in list assignment at /sw/lib/perl5/Fink/PkgVersion.pm line 1748.
../configure --prefix=/sw
configure: Configuring ccache
checking for gcc... gcc
checking for C compiler default output... a.out
....snip...
gcc -g -O2 -Wall -W -I. -prebind -o ccache ccache.o mdfour.o hash.o execute.o util.o args.o stats.o cleanup.o snprintf.o unify.o
Use of uninitialized value in list assignment at /sw/lib/perl5/Fink/PkgVersion.pm line 1734.
rm -rf /sw/src/root-ccache-2.1-1
mkdir -p /sw/src/root-ccache-2.1-1/sw
mkdir -p /sw/src/root-ccache-2.1-1/DEBIAN
Use of uninitialized value in list assignment at /sw/lib/perl5/Fink/PkgVersion.pm line 1734.
mkdir -p /sw/src/root-ccache-2.1-1/sw/bin
......
-Ben
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William G. Scott
Associate Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
Sinsheimer Laboratories
University of California at Santa Cruz
Santa Cruz, California 95064
USA
phone: +1-831-459-5367 (office)
+1-831-459-5292 (lab)
fax: +1-831-4593139 (fax)
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