Hi,
I am attemping to make a package for bio-emboss (a perl module for emboss).
Now I need to modify the makefile to point to some specific emboss files.
Here's what it says:
#
# --- The following lines need to be adjusted !!!!!
#
# --- installation path of EMBOSS (--PREFIX during EMBOSS' configure)
# (if you did no "make install" of EMBOSS,
# you must adjust $EMB_LIBS below manually)
# --- path to EMBOSS' sources (for the *.h files)
$EMB_SRC_ROOT = "/usr/local/src/EMBOSS-2.5.1";
# --- Change the following lines only, if EMBOSS libraries
# or EMBOSS includes weren't found.
#
# $EMB_LIBS: The nucleus, ajaxg, ajax and plplot libraries are taken
# from the lib/ subdirectory in $EMB_ROOT by default.
# $EMB_INC: The *.h files are taken from the subdirectories
# nucleus, ajax and plplot in $EMB_SRC_ROOT by default.
#
@emb_libs = qw(nucleus ajax ajaxg plplot);
$EMB_LIBS = "-L$EMB_ROOT/lib " .
join (" ", map { "-l$_" } @emb_libs) .
" " . $EMB_EXT_LIBS;
$EMB_INC = join " ", map { "-I$EMB_SRC_ROOT/$_" } @emb_libs;
If I understand this correctly it wants to be able to access files from the
tarball of emboss. How do I approach this? I also happen to be the
maintainer of emboss, so maybe I can change that installation so it will
also install the needed sourcefiles and libraries so bio-emboss can find
them. Is this possible, and yes, how? And if no, any suggestions to do this?
many thanks,
- Koen.
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