I've been thinking about how some of this would work. It's also come up recently on the DarwinPorts list, and the suggestion was to use /Developer/Tools/SplitForks to be able to package up the apps, and then put them back together with /System/Library/CoreServices/FixupResourceForks. Because darwinports doesn't have much control over pre/post install scripts, it'll probably be harder for them to deal with, but the way I see it happening is this:
1. Add a new field like JarFiles: BundleFiles
...
4. Fink adds calling FixupResourceForks to the PostInstall of all packages (preferably with a list of files, kind of like the prebinding stuff, so it's not too taxing on the system; it has to be done per-package in case another package depends on, say, the python framework to be able to build).
I've committed an implementation of this to my experimental tree. It's in experimental/rangerrick/patches/ -- called "handle-bundles.patch". Feel free to try it out.
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