I have posted three updated packages on the fink tracking system
for lammpi 7.1.1-1, fftw3-3.0.1-1 and gromacs/gromacs-mpi 3.3-1.
However I discovered afterwards that while the lam-7.1.1-1 package
has a working lamboot it seems to have broken the linking of gromacs-mpi.
I am now seeing errors of the form...
/bin/sh ../../libtool --mode=link --tag=CC mpicc -O3 -fomit-frame-pointer
-finline-functions -Wall -Wno-unused -no-cpp-precomp -faltivec -mcpu=7450
-mtune=970 -L/sw/lib -o libmd_mpi.la -rpath /sw/lib -version-info 4:0:0
calcmu.lo calcvir.lo constr.lo coupling.lo ebin.lo edsam.lo ewald.lo force.lo
ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo ns.lo nsb.lo nsgrid.lo pme.lo
pppm.lo fftgrid.lo pull.lo pullinit.lo pullio.lo pullutil.lo rf_util.lo
shakef.lo sim_util.lo splittop.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo
wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo
gmx_fft_fftw3.lo -L/usr/X11R6/lib -lfftw3f -lm -lXm -lXt -lSM -lICE -lXext
-lXp -lX11
mpicc -dynamiclib -flat_namespace -undefined suppress -o
.libs/libmd_mpi.4.dylib .libs/calcmu.o .libs/calcvir.o .libs/constr.o
.libs/coupling.o .libs/ebin.o .libs/edsam.o .libs/ewald.o .libs/force.o
.libs/ghat.o .libs/init.o .libs/mdatom.o .libs/mdebin.o .libs/minimize.o
.libs/ns.o .libs/nsb.o .libs/nsgrid.o .libs/pme.o .libs/pppm.o .libs/fftgrid.o
.libs/pull.o .libs/pullinit.o .libs/pullio.o .libs/pullutil.o .libs/rf_util.o
.libs/shakef.o .libs/sim_util.o .libs/splittop.o .libs/tables.o .libs/tgroup.o
.libs/update.o .libs/vcm.o .libs/vsite.o .libs/wnblist.o .libs/csettle.o
.libs/clincs.o .libs/qmmm.o .libs/gmx_fft.o .libs/gmx_parallel_3dfft.o
.libs/gmx_fft_fftw3.o /usr/X11R6/lib/libXt.dylib /usr/X11R6/lib/libX11.dylib
/usr/X11R6/lib/libXp.dylib /usr/X11R6/lib/libXext.dylib
/usr/X11R6/lib/libICE.dylib /usr/X11R6/lib/libSM.dylib
/usr/X11R6/lib/libXmu.dylib -L/sw/lib -L/usr/X11R6/lib /sw/lib/libfftw3f.dylib
-lm /sw/lib/libXm.dylib -lXt -lSM -lICE -lXext -lXp -lX11 -mcpu=7450
-mtune=970 -install_name /sw/lib/libmd_mpi.4.dylib -compatibility_version 5
-current_version 5.0
powerpc-apple-darwin8-gcc-4.0.1: -force_flat_namespace not allowed with
-dynamiclib
which I didn't see with this packaging for gromacs/gromacs-mpi 3.3-1 with
lam-7.0.6-11. Does anyone give me some clues on what the problem is here?
I am assuming it is related to the need to force MACOSX_DEPLOYMENT_TARGET
to 10.2 to prevent a broken lamboot from been created under fink. For now
I have regressed out my change to lam-7.1.1-1 which built liblammpio.a
as PIC code although that doesn't seem to fixed this breakage I am seeing
now. Thanks in advance for any hints.
Jack
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