Hi,

A user reported the following error. I have no idea what the first  
error means. Is it a conflict with module-build-pm, or is it something  
that can be fixed in the info or patch file?

I cannot reproduce the second error, but I noticed in his output the  
line "Will try to install symlinks to /sw/sw/bin"  -  note the double / 
sw. Any ideas?

(I am on a G5 iMac, 10.5.1)


thanks,

- Koen.





Begin forwarded message:

> From: Steffen Schmidt <[EMAIL PROTECTED]>
> Date: November 28, 2007 7:51:29 AM EST
> To: Koen van der Drift <[EMAIL PROTECTED]>
> Subject: fink bioperl-pm588 problem
>
> Hi,
>
> thank you for supporting bioperl :-) I experience some problems when  
> installing bioperl-pm588. Do you experience the same problems? My  
> system is OS X (tested on both: Tiger & Leopard) Intel - fink   
> 0.27.9-31
>
> Steffen
>
> a) with module-build-pm588 installed:
>
> ...
> patching file ModuleBuildBioperl.pm
> ARCHFLAGS="" /sw/bin/perl5.8.8 Makefile.PL PERL=/sw/bin/perl5.8.8  
> PREFIX=/sw INSTALLPRIVLIB=/sw/lib/perl5/5.8.8 INSTALLARCHLIB=/sw/lib/ 
> perl5/5.8.8/darwin-thread-multi-2level INSTALLSITELIB=/sw/lib/ 
> perl5/5.8.8 INSTALLSITEARCH=/sw/lib/perl5/5.8.8/darwin-thread- 
> multi-2level INSTALLMAN1DIR=/sw/share/man/man1 INSTALLMAN3DIR=/sw/ 
> share/man/man3 INSTALLSITEMAN1DIR=/sw/share/man/man1  
> INSTALLSITEMAN3DIR=/sw/share/man/man3 INSTALLBIN=/sw/bin  
> INSTALLSITEBIN=/sw/bin INSTALLSCRIPT=/sw/bin
> Sorry, PREFIX is not supported.  See the Module::Build
> documentation for 'destdir' or 'install_base' instead.
> ### execution of ARCHFLAGS="" failed, exit code 255
> ...
>
> b) without module-build-pm588:
>
> it works until installation:
> ...
> Installing /sw/src/fink.build/root-bioperl-pm588-1.5.2-3/sw/share/ 
> man/man3/Bio::Variation::VariantI.3pm
> Installing /sw/src/fink.build/root-bioperl-pm588-1.5.2-3/sw/share/ 
> man/man3/Bio::WebAgent.3pm
> Writing /sw/src/fink.build/root-bioperl-pm588-1.5.2-3/sw/lib/ 
> perl5/5.8.8/darwin-thread-multi-2level/auto/Bio/.packlist
> /sw/bin/perl5.8.8 maintenance/symlink_script.pl
> Will try to install symlinks to /sw/sw/bin
> mkdir -p /sw/src/fink.build/root-bioperl-pm588-1.5.2-3/sw/share/ 
> bioperl-pm588
> cp -r models examples doc /sw/src/fink.build/root-bioperl- 
> pm588-1.5.2-3/sw/share/bioperl-pm588
> mkdir -p /sw/src/fink.build/root-bioperl-pm588-1.5.2-3/sw/share/ 
> bioperl-pm588/t
> cp -r t/data /sw/src/fink.build/root-bioperl-pm588-1.5.2-3/sw/share/ 
> bioperl-pm588/t
> mkdir -p /sw/src/fink.build/root-bioperl-pm588-1.5.2-3/sw/lib/ 
> perl5/5.8.8
> mv /sw/src/fink.build/root-bioperl-pm588-1.5.2-3/sw/man /sw/src/ 
> fink.build/root-bioperl-pm588-1.5.2-3/sw/lib/perl5/5.8.8
> mv: cannot stat `/sw/src/fink.build/root-bioperl-pm588-1.5.2-3/sw/ 
> man': No such file or directory
> ### execution of mv failed, exit code 1
>
>


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