Jack,
Still fails on my system:
/bin/rm -f .update .includes
cd contrib;make -f Makefile.delsci
cd modules;echo installdir=/sw/lib/pymol/modules > Makefile.pre.in
cd modules;echo PYTHON=python2.5 >> Makefile.pre.in
cd modules;echo PYTHONFRAMEWORK=Python >> Makefile.pre.in
cd modules;cat Makefile.pre.in.src >> Makefile.pre.in
cd modules;make -f Makefile.pre.in boot
rm -f *.o *~
rm -f *.a tags TAGS config.c Makefile.pre python2.5 sedscript
rm -f *.so *.sl so_locations
VERSION=`python2.5 -c "import sys; print sys.version[:3]"`; \
installdir=`python2.5 -c "import sys; print sys.prefix"`; \
exec_installdir=`python2.5 -c "import sys; print
sys.exec_prefix"`; \
make -f ./Makefile.pre.in VPATH=. srcdir=. \
VERSION=$VERSION \
installdir=$installdir \
exec_installdir=$exec_installdir \
Makefile
sed -n \
-e '1s/.*/1i\\/p' \
-e '2s%.*%# Generated automatically from Makefile.pre.in by
sedscript.%p' \
-e '/^VERSION=/s/^VERSION=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^CC=/s/^CC=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^CCC=/s/^CCC=[ ]*\(.*\)/[EMAIL PROTECTED]@]%CCC=\1%/p' \
-e '/^LINKCC=/s/^LINKCC=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^OPT=/s/^OPT=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^LDFLAGS=/s/^LDFLAGS=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^LDLAST=/s/^LDLAST=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^DEFS=/s/^DEFS=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^LIBS=/s/^LIBS=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^LIBM=/s/^LIBM=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^LIBC=/s/^LIBC=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^RANLIB=/s/^RANLIB=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^MACHDEP=/s/^MACHDEP=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^SO=/s/^SO=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^LDSHARED=/s/^LDSHARED=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^CCSHARED=/s/^CCSHARED=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^SGI_ABI=/s/^SGI_ABI=[ ]*\(.*\)/[EMAIL PROTECTED]@]%\1%/p' \
-e '/^LINKFORSHARED=/s/^LINKFORSHARED=[ ]*\(.*\)/[EMAIL
PROTECTED]@]
%\1%/p' \
-e '/^prefix=/s/^prefix=\(.*\)/s%^prefix=.*%prefix=\1%/p' \
-e '/^exec_prefix=/s/^exec_prefix=\(.*\)/s%^exec_prefix=.*
%exec_prefix=\1%/p' \
/sw/lib/python2.5/config/Makefile >sedscript
echo "/[EMAIL PROTECTED]@/d" >>sedscript
echo "/^installdir=/s%=.*%= /sw%" >>sedscript
echo "/^exec_installdir=/s%=.*%=/sw%" >>sedscript
echo "/^srcdir=/s%=.*%= .%" >>sedscript
echo "/^VPATH=/s%=.*%= .%" >>sedscript
echo "/^LINKPATH=/s%=.*%= %" >>sedscript
echo "/^BASELIB=/s%=.*%= %" >>sedscript
echo "/^BASESETUP=/s%=.*%= %" >>sedscript
sed -f sedscript ./Makefile.pre.in >Makefile.pre
cp ./Setup.in Setup
/sw/lib/python2.5/config/makesetup \
-m Makefile.pre -c /sw/lib/python2.5/config/config.c.in Setup
-n /
sw/lib/python2.5/config/Setup.config /sw/lib/python2.5/config/
Setup.local /sw/lib/python2.5/config/Setup
make -f Makefile do-it-again
/sw/lib/python2.5/config/makesetup \
-m Makefile.pre -c /sw/lib/python2.5/config/config.c.in Setup
-n /
sw/lib/python2.5/config/Setup.config /sw/lib/python2.5/config/
Setup.local /sw/lib/python2.5/config/Setup
cd modules;make
gcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include/
python2.5 -I/sw/include/python2.5 -I/sw/include -c ././
ExtensionClass.c -o ./ExtensionClass.o
././ExtensionClass.c: In function 'initializeBaseExtensionClass':
././ExtensionClass.c:1542: warning: passing argument 2 of
'PyMapping_HasKeyString' discards qualifiers from pointer target type
././ExtensionClass.c:1553: warning: passing argument 3 of 'newCMethod'
discards qualifiers from pointer target type
././ExtensionClass.c:1553: warning: passing argument 6 of 'newCMethod'
discards qualifiers from pointer target type
././ExtensionClass.c:1561: warning: passing argument 3 of 'newCMethod'
discards qualifiers from pointer target type
././ExtensionClass.c:1561: warning: passing argument 6 of 'newCMethod'
discards qualifiers from pointer target type
././ExtensionClass.c:1570: warning: passing argument 2 of
'PyMapping_SetItemString' discards qualifiers from pointer target type
././ExtensionClass.c:1580: warning: passing argument 2 of
'PyMapping_GetItemString' discards qualifiers from pointer target type
././ExtensionClass.c:1583: warning: assignment discards qualifiers
from pointer target type
././ExtensionClass.c: At top level:
././ExtensionClass.c:2870: warning: initialization from incompatible
pointer type
././ExtensionClass.c:2872: warning: 'intargfunc' is deprecated
././ExtensionClass.c:2872: warning: initialization from incompatible
pointer type
././ExtensionClass.c:2873: warning: 'intargfunc' is deprecated
././ExtensionClass.c:2873: warning: initialization from incompatible
pointer type
././ExtensionClass.c:2874: warning: 'intintargfunc' is deprecated
././ExtensionClass.c:2874: warning: initialization from incompatible
pointer type
././ExtensionClass.c:2875: warning: initialization from incompatible
pointer type
././ExtensionClass.c:2876: warning: initialization from incompatible
pointer type
././ExtensionClass.c:2988: warning: initialization from incompatible
pointer type
././ExtensionClass.c: In function 'CopyMethods':
././ExtensionClass.c:3267: warning: passing argument 2 of
'PyDict_Next' from incompatible pointer type
./ExtensionClass.o -o ./ExtensionClass.so
make[2]: execvp: ./ExtensionClass.o: Permission denied
make[2]: *** [ExtensionClass.so] Error 127
make[1]: *** [make-modules] Error 2
make: *** [unix] Error 2
### execution of make failed, exit code 2
### execution of /var/tmp/tmp.3.zM8wPC failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-pymol-py25-1.0r2-1001
(Reading database ... 136568 files and directories currently installed.)
Removing fink-buildlock-pymol-py25-1.0r2-1001 ...
Failed: phase compiling: pymol-py25-1.0r2-1001 failed
Package manager version: 0.28.2
Distribution version: selfupdate-cvs Sat May 10 09:31:44 2008, 10.5,
powerpc
- Koen.
On May 9, 2008, at 8:55 PM, Jack Howarth wrote:
> This problem appears to be due to the following change in
> python 2.5.2...
>
> *** python/branches/release25-maint/Modules/makesetup 2006/08/17
> 00:38:04 51333
> --- python/branches/release25-maint/Modules/makesetup 2007/09/05
> 11:47:22 57990
> ***************
> *** 238,244 ****
> no) SHAREDMODS="$SHAREDMODS $file";;
> esac
> rule="$file: $objs"
> ! rule="$rule; \$(LDSHARED) $objs $libs $ExtraLibs -o
> $file"
> echo "$rule" >>$rulesf
> done
> done
> --- 238,244 ----
> no) SHAREDMODS="$SHAREDMODS $file";;
> esac
> rule="$file: $objs"
> ! rule="$rule; \$(BLDSHARED) $objs $libs $ExtraLibs -o
> $file"
> echo "$rule" >>$rulesf
> done
> done
>
>
> I think my current hack is appropriate since pymol-py needs to be
> able to build
> against previous versions of python as well as 2.5.2.
> Jack
>
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