-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Gavin Sherlock wrote: > Hi, > > Maybe bioperl is not meant to work on 10.6, but I tried a completely fresh > fink installation on 10.6 (32-bit fink), and then: > > fink install bioperl-pm588 > > however, when I try to use a program that uses a bioperl module, it does: > > Can't locate Bio/SeqIO.pm in @INC (@INC contains: > /sw/lib/perl5/darwin-thread-multi-2level /sw/lib/perl5 /sw/lib/perl5/darwin > /Library/Perl/Updates/5.10.0/darwin-thread-multi-2level > /Library/Perl/Updates/5.10.0 > /System/Library/Perl/5.10.0/darwin-thread-multi-2level > /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin-thread-multi-2level > /Library/Perl/5.10.0 /Network/Library/Perl/5.10.0/darwin-thread-multi-2level > /Network/Library/Perl/5.10.0 /Network/Library/Perl > /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level > /System/Library/Perl/Extras/5.10.0 .) at gatherMitochondrialReads.pl line 25. > > The libraries themselves are in: > > /sw/lib/perl5/5.8.8 > > but if I add that to the PERL5LIB environmental variable, I now get: > > dyld: lazy symbol binding failed: Symbol not found: _Perl_Tstack_sp_ptr > Referenced from: > /sw/lib/perl5/5.8.8/darwin-thread-multi-2level/auto/IO/IO.bundle > Expected in: dynamic lookup > > dyld: Symbol not found: _Perl_Tstack_sp_ptr > Referenced from: > /sw/lib/perl5/5.8.8/darwin-thread-multi-2level/auto/IO/IO.bundle > Expected in: dynamic lookup > > Trace/BPT trap > > Is there anyway to get bioperl working on 10.6 within fink, or is it not > currently supported? > > Many thanks in advance (and thanks for fink - I use it all the time). > Cheers, > Gavin > ________________________________________________________ > > Gavin Sherlock > Assistant Professor, Research > Dept. of Genetics > S201A, Grant Building, > Stanford University Medical School, > Stanford, > CA 94305-5120 > Tel: 650 498 6012 > Fax: 650 724 3701 > > http://genome-www.stanford.edu/~sherlock > > >
Does your program that calls the bioperl module run Fink's perl5.8.8 as _its_ interpreter? - -- Alexander Hansen Fink User Liaison -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAkr8UF8ACgkQB8UpO3rKjQ8FIwCgptBrn21IcTZK3mXeF5RhseAY xdIAnito2lY8AwBcEqAvOhBYQsnXFPXn =bO49 -----END PGP SIGNATURE----- ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ Fink-devel mailing list [email protected] http://news.gmane.org/gmane.os.apple.fink.devel Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-devel
